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6A6S
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BU of 6a6s by Molmil
Crystal structure of the modified fructosyl peptide oxidase from Aspergillus nidulans in complex with FSA, Seleno-methionine Derivative
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, 1-S-(carboxymethyl)-1-thio-beta-D-fructopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Ogawa, N, Maruyama, Y, Itoh, T, Hashimoto, W, Murata, K.
Deposit date:2018-06-29
Release date:2019-05-15
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis.
Sci Rep, 9, 2019
3A0N
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BU of 3a0n by Molmil
Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus
Descriptor: VAL-1, beta-D-glucopyranuronic acid
Authors:Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2009-03-23
Release date:2009-10-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
1Y3Q
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BU of 1y3q by Molmil
Structure of AlgQ1, alginate-binding protein
Descriptor: AlgQ1, CALCIUM ION
Authors:Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2004-11-26
Release date:2005-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
1Y3P
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BU of 1y3p by Molmil
Structure of AlgQ1, alginate-binding protein, complexed with an alginate tetrasaccharide
Descriptor: AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid
Authors:Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2004-11-26
Release date:2005-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
1Y3N
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BU of 1y3n by Molmil
Structure of AlgQ1, alginate-binding protein, complexed with an alginate disaccharide
Descriptor: AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid
Authors:Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2004-11-26
Release date:2005-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
1X1J
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BU of 1x1j by Molmil
Crystal Structure of Xanthan Lyase (N194A) with a Substrate.
Descriptor: (4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4,5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7-DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID), CALCIUM ION, xanthan lyase
Authors:Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2005-04-04
Release date:2005-07-19
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism
J.Mol.Biol., 350, 2005
1X1H
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Crystal Structure of Xanthan Lyase (N194A)
Descriptor: xanthan lyase
Authors:Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2005-04-04
Release date:2005-07-19
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism
J.Mol.Biol., 350, 2005
1X1I
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Crystal Structure of Xanthan Lyase (N194A) Complexed with a Product
Descriptor: (4AR,6R,7S,8R,8AS)-HEXAHYDRO-6,7,8-TRIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID, xanthan lyase
Authors:Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2005-04-04
Release date:2005-07-19
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism
J.Mol.Biol., 350, 2005
1VD5
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BU of 1vd5 by Molmil
Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCINE, ...
Authors:Itoh, T, Akao, S, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2004-03-18
Release date:2004-07-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
J.Biol.Chem., 279, 2004
1Y3I
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Crystal Structure of Mycobacterium tuberculosis NAD kinase-NAD complex
Descriptor: GLYCEROL, Inorganic polyphosphate/ATP-NAD kinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Mori, S, Yamasaki, M, Maruyama, Y, Momma, K, Kawai, S, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2004-11-25
Release date:2005-01-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex
Biochem.Biophys.Res.Commun., 327, 2005
1Y3H
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BU of 1y3h by Molmil
Crystal Structure of Inorganic Polyphosphate/ATP-NAD kinase from Mycobacterium tuberculosis
Descriptor: Inorganic polyphosphate/ATP-NAD kinase
Authors:Mori, S, Yamasaki, M, Maruyama, Y, Momma, K, kawai, S, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2004-11-24
Release date:2005-01-18
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex
BIOCHEM.BIOPHYS.RES.COMMUN., 327, 2005
2A4V
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BU of 2a4v by Molmil
Crystal Structure of a truncated mutant of yeast nuclear thiol peroxidase
Descriptor: Peroxiredoxin DOT5
Authors:Choi, J, Choi, S, Chon, J.-K, Choi, J, Cha, M.-K, Kim, I.-H, Shin, W.
Deposit date:2005-06-29
Release date:2006-03-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the C107S/C112S mutant of yeast nuclear 2-Cys peroxiredoxin
Proteins, 61, 2005
2Z42
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BU of 2z42 by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1
Descriptor: Alginate lyase, SULFATE ION
Authors:Ogura, K, Yamasaki, M, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2007-06-12
Release date:2008-05-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1
To be published
2ZAB
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BU of 2zab by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG)
Descriptor: Alginate lyase, GLYCEROL, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid
Authors:Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAC
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BU of 2zac by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG)
Descriptor: Alginate lyase, GLYCEROL, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid
Authors:Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZUY
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BU of 2zuy by Molmil
Crystal structure of exotype rhamnogalacturonan lyase YesX
Descriptor: CALCIUM ION, YesX protein
Authors:Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2008-10-28
Release date:2009-02-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases
J.Biol.Chem., 284, 2009
2Z8R
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BU of 2z8r by Molmil
Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein
Authors:Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-09-10
Release date:2007-10-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER
J.Biol.Chem., 282, 2007
2ZAA
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BU of 2zaa by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' H191N/Y284F in Complex with Substrate (GGMG)
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Alginate lyase, GLYCEROL
Authors:Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2Z8S
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BU of 2z8s by Molmil
Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid
Descriptor: CALCIUM ION, YesW protein, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-09-10
Release date:2007-10-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER
J.Biol.Chem., 282, 2007
3A09
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BU of 3a09 by Molmil
Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with unsaturated trimannuronate
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid, AlgQ1, CALCIUM ION
Authors:Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2009-03-12
Release date:2010-03-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with unsaturated trimannuronate
To be Published
2ZA9
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BU of 2za9 by Molmil
Crystal Structure of Alginate lyase A1-II' N141C/N199C
Descriptor: Alginate lyase, SULFATE ION
Authors:Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZUX
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BU of 2zux by Molmil
Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein, ...
Authors:Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2008-10-28
Release date:2009-02-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases
J.Biol.Chem., 284, 2009
3AFM
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BU of 3afm by Molmil
Crystal structure of aldose reductase A1-R responsible for alginate metabolism
Descriptor: Carbonyl reductase
Authors:Takase, R, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2010-03-10
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1
Biochim.Biophys.Acta, 1804, 2010
3AMI
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BU of 3ami by Molmil
The crystal structure of the M16B metallopeptidase subunit from Sphingomonas sp. A1
Descriptor: zinc peptidase
Authors:Maruyama, Y, Chuma, A, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2010-08-20
Release date:2011-02-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase
J.Mol.Biol., 407, 2011
3AMJ
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BU of 3amj by Molmil
The crystal structure of the heterodimer of M16B peptidase from Sphingomonas sp. A1
Descriptor: ZINC ION, zinc peptidase active subunit, zinc peptidase inactive subunit
Authors:Maruyama, Y, Chuma, A, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2010-08-20
Release date:2011-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase
J.Mol.Biol., 407, 2011

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