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5GX8
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BU of 5gx8 by Molmil
Crystal structure of solute-binding protein related to glycosaminoglycans
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, D(-)-TARTARIC ACID, ...
Authors:Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2016-09-15
Release date:2017-07-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.778 Å)
Cite:A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
5GX6
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BU of 5gx6 by Molmil
Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with a sulfate group at C-4 position of GalNAc
Descriptor: 1,2-ETHANEDIOL, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose, CALCIUM ION, ...
Authors:Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2016-09-15
Release date:2017-07-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
4E1Y
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BU of 4e1y by Molmil
Alginate lyase A1-III H192A apo form
Descriptor: Alginate lyase
Authors:Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K.
Deposit date:2012-03-07
Release date:2012-04-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
4F10
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BU of 4f10 by Molmil
Alginate lyase A1-III H192A complexed with tetrasaccharide
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, Alginate lyase, alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K.
Deposit date:2012-05-05
Release date:2012-06-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
7CLJ
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BU of 7clj by Molmil
Crystal structure of Thermoplasmatales archaeon heliorhodopsin E108D mutant
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, RETINAL, SULFATE ION, ...
Authors:Tanaka, T, Shihoya, W, Yamashita, K, Nureki, O.
Deposit date:2020-07-21
Release date:2020-09-02
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for unique color tuning mechanism in heliorhodopsin.
Biochem.Biophys.Res.Commun., 533, 2020
1IBQ
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BU of 1ibq by Molmil
ASPERGILLOPEPSIN FROM ASPERGILLUS PHOENICIS
Descriptor: ASPERGILLOPEPSIN, ZINC ION, alpha-D-mannopyranose
Authors:Cho, S.W, Shin, W.
Deposit date:2001-03-28
Release date:2001-07-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structure of aspergillopepsin I from Aspergillus phoenicis: variations of the S1'-S2 subsite in aspartic proteinases.
Acta Crystallogr.,Sect.D, 57, 2001
1IB4
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BU of 1ib4 by Molmil
Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5
Descriptor: CADMIUM ION, POLYGALACTURONASE, alpha-D-mannopyranose, ...
Authors:Cho, S.W, Shin, W.
Deposit date:2001-03-27
Release date:2001-09-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:The X-ray structure of Aspergillus aculeatus polygalacturonase and a modeled structure of the polygalacturonase-octagalacturonate complex.
J.Mol.Biol., 311, 2001
1IA5
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BU of 1ia5 by Molmil
POLYGALACTURONASE FROM ASPERGILLUS ACULEATUS
Descriptor: POLYGALACTURONASE, alpha-D-mannopyranose, alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Cho, S.W, Lee, S, Shin, W.
Deposit date:2001-03-22
Release date:2001-09-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:The X-ray structure of Aspergillus aculeatus polygalacturonase and a modeled structure of the polygalacturonase-octagalacturonate complex.
J.Mol.Biol., 311, 2001
1FP3
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BU of 1fp3 by Molmil
CRYSTAL STRUCTURE OF N-ACYL-D-GLUCOSAMINE 2-EPIMERASE FROM PORCINE KIDNEY
Descriptor: N-ACYL-D-GLUCOSAMINE 2-EPIMERASE
Authors:Itoh, T, Mikami, B, Maru, I, Ohta, Y, Hashimoto, W, Murata, K.
Deposit date:2000-08-30
Release date:2000-11-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of N-acyl-D-glucosamine 2-epimerase from porcine kidney at 2.0 A resolution.
J.Mol.Biol., 303, 2000
8IY6
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BU of 8iy6 by Molmil
ETB-Gi complex bound to Endotheline-1, focused on receptor
Descriptor: Endothelin type B receptor, Endothelin-1
Authors:Sano, F.K, Akasaka, H, Shihoya, W, Nureki, O.
Deposit date:2023-04-04
Release date:2023-08-16
Last modified:2023-12-06
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Cryo-EM structure of the endothelin-1-ET B -G i complex.
Elife, 12, 2023
8IY5
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BU of 8iy5 by Molmil
ETB-Gi complex bound to endothelin-1
Descriptor: Endothelin type B receptor, Endothelin-1, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Sano, F.K, Akasaka, H, Shihoya, W, Nureki, O.
Deposit date:2023-04-04
Release date:2023-08-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structure of the endothelin-1-ET B -G i complex.
Elife, 12, 2023
7VGK
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BU of 7vgk by Molmil
Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI
Descriptor: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase
Authors:Iwase, H, Oiki, S, Mikami, B, Takase, R, Hashimoto, W.
Deposit date:2021-09-16
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structures of Lacticaseibacillus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI in complex with substrate analogs
J.Appl.Glyosci., 2023
7VEW
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BU of 7vew by Molmil
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in complex with unsaturated trigalacturonic acid
Descriptor: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ...
Authors:Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W.
Deposit date:2021-09-10
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.
Sci Rep, 12, 2022
7VEQ
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BU of 7veq by Molmil
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in an open conformation
Descriptor: GLYCEROL, SPH1118
Authors:Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W.
Deposit date:2021-09-10
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.696 Å)
Cite:Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.
Sci Rep, 12, 2022
7VET
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BU of 7vet by Molmil
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in a closed conformation
Descriptor: SPH1118
Authors:Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W.
Deposit date:2021-09-10
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.
Sci Rep, 12, 2022
7VEV
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BU of 7vev by Molmil
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in complex with MES
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, SPH1118
Authors:Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W.
Deposit date:2021-09-10
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.498 Å)
Cite:Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.
Sci Rep, 12, 2022
7VER
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BU of 7ver by Molmil
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in a full open conformation
Descriptor: GLYCEROL, SPH1118
Authors:Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W.
Deposit date:2021-09-10
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.
Sci Rep, 12, 2022
7VEU
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BU of 7veu by Molmil
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in complex with galacturonic acid
Descriptor: GLYCEROL, SPH1118, alpha-D-galactopyranuronic acid
Authors:Anamizu, K, Takase, R, Hio, M, Watanebe, D, Mikami, B, Hashimoto, W.
Deposit date:2021-09-10
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.736 Å)
Cite:Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.
Sci Rep, 12, 2022
7WGU
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BU of 7wgu by Molmil
Crystal structure of metal-binding protein EfeO from Escherichia coli
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Iron uptake system protein EfeO, ...
Authors:Nakatsuji, S, Takase, R, Mikami, B, Hashimoto, W.
Deposit date:2021-12-29
Release date:2022-12-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of EfeB and EfeO in a bacterial siderophore-independent iron transport system
Biochem.Biophys.Res.Commun., 594, 2022
6JBO
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BU of 6jbo by Molmil
Crystal structure of EfeO-like protein Algp7 containing samarium ion
Descriptor: 1,2-ETHANEDIOL, Alginate-binding protein, CITRIC ACID
Authors:Okumura, K, Takase, R, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2019-01-26
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer
To Be Published
6JBN
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BU of 6jbn by Molmil
Crystal structure of Sphingomonas sp. A1 peroxidase EfeB responsible for import of iron
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, OXYGEN MOLECULE, ...
Authors:Okumura, K, Takase, R, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2019-01-26
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer
To Be Published
6INZ
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BU of 6inz by Molmil
Crystal structure of solute-binding protein complexed with unsaturated hyaluronan disaccharide
Descriptor: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Extracellular solute-binding protein family 1, ...
Authors:Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2018-10-29
Release date:2019-09-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.289 Å)
Cite:Substrate recognition by bacterial solute-binding protein is responsible for import of extracellular hyaluronan and chondroitin sulfate from the animal host.
Biosci.Biotechnol.Biochem., 83, 2019
6K1Q
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BU of 6k1q by Molmil
Human endothelin receptor type-B in complex with inverse agonist IRL2500
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2~{S})-2-[[(2~{R})-2-[(3,5-dimethylphenyl)carbonyl-methyl-amino]-3-(4-phenylphenyl)propanoyl]amino]-3-(1~{H}-indol-3-yl)propanoic acid, Endothelin B receptor,Endolysin,Endothelin B receptor, ...
Authors:Nagiri, C, Shihoya, W, Nureki, O.
Deposit date:2019-05-11
Release date:2019-07-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of human endothelin ETBreceptor in complex with peptide inverse agonist IRL2500.
Commun Biol, 2, 2019
6JHX
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BU of 6jhx by Molmil
Crystal structure of alginate-binding protein AlgQ2 without calcium ion
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, AlgQ2
Authors:Okumura, K, Maruyama, Y, Murata, K, Hashimoto, W.
Deposit date:2019-02-19
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of alginate-binding protein AlgQ2 without calcium ion
To Be Published
3VLU
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BU of 3vlu by Molmil
Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with saturated trimannuronate
Descriptor: AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2011-12-05
Release date:2012-01-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012

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