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9VTM

Structure of Cdr1 with AMPPNP

This is a non-PDB format compatible entry.
Summary for 9VTM
Entry DOI10.2210/pdb9vtm/pdb
EMDB information65335
DescriptorPleiotropic ABC efflux transporter of multiple drugs CDR1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER (2 entities in total)
Functional Keywordscandida albicans, multidrug resistance, substrate efflux cycle, inhibitor, transport protein
Biological sourceCandida albicans SC5314
Total number of polymer chains1
Total formula weight170665.85
Authors
Wang, Z.,Yang, S.,Zhang, B.,Yu, X. (deposition date: 2025-07-10, release date: 2026-09-30)
Primary citationWang, Z.,Yang, S.,Zhang, B.,Jiang, H.,Li, Y.,Gao, R.,Wang, Y.,Fan, F.,Dong, L.,Qiu, J.,Li, X.,Zhou, Y.,Murchie, A.I.H.,Yu, X.
Cryo-EM structures of Cdr1 reveal snapshots of substrate transport and diverse inhibitor recognition.
Sci Adv, 12:eaef7706-eaef7706, 2026
Cited by
PubMed Abstract: In -a World Health Organization fungal priority pathogen-overexpression of the adenosine triphosphate (ATP)-binding cassette transporter Cdr1 drives multidrug resistance. We present seven cryo-electron microscopy structures capturing substrate entry and expulsion. An inward-facing transmembrane channel with three on-off substrate binding sites defines a proposed entry pathway for a single substrate molecule. Coordinated ATP binding to both nucleotide-binding domains induces transmembrane domain closure, driving the substrate expulsion; adenosine diphosphate release following ATP hydrolysis resets the transporter to an inward-open conformation, enabling substrate entry for the next translocation cycle. Structures with three structurally diverse inhibitors resolve two distinct binding modes: one occupying all three substrate sites and another specifically binding two extracellular-proximal sites. These findings provide snapshots of the substrate translocation cycle and structural blueprints for antifungal drug design.
PubMed: 42664345
DOI: 10.1126/sciadv.aef7706
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (2.92 Å)
Structure validation

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