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9SK3

Trimeric photosystem I of Acaryochloris marina NIES-2412

This is a non-PDB format compatible entry.
Summary for 9SK3
Entry DOI10.2210/pdb9sk3/pdb
EMDB information54956
DescriptorPhotosystem I protein PsaA, Photosystem I protein PsaL, Photosystem I protein PsaM, ... (21 entities in total)
Functional Keywordschlorophyll d, photosystem i, electron transport
Biological sourceAcaryochloris marina NIES-2412
More
Total number of polymer chains36
Total formula weight1070165.60
Authors
Leong, H.F.,Consoli, G. (deposition date: 2025-09-01, release date: 2026-07-08)
Primary citationOliver, T.J.,Elias, E.,Consoli, G.,Leong, H.F.,Cordon-Preciado, V.,Fantuzzi, A.,Cardona, T.,Rutherford, A.W.,Croce, R.
Far-red chlorophyll d clusters extend photosystem I absorption toward the red limit.
Sci Adv, 12:eaed7355-eaed7355, 2026
Cited by
PubMed Abstract: Oxygenic photosynthesis is usually limited to visible light, but the marine cyanobacterium pushes this boundary by harvesting far-red photons with chlorophyll d. The best-studied strain, MBIC11017, unexpectedly lacks low-energy chlorophylls ("red forms") in photosystem I, limiting absorption beyond 740 nanometers. Here, we show that another strain, NIES-2412, has evolved a strategy to absorb far-red photons up to 760 nanometers. Combining time-resolved fluorescence spectroscopy with cryo-electron microscopy at 2.64-angstrom resolution, we identify two distinct classes of chlorophyll d red forms in its photosystem I. One class originates from classical charge-transfer-exciton mixing, while the other arises purely from excitonic interactions. Mapping all 96 chlorophylls d reveals the precise pigments responsible for these far-red states. We also uncover a previously unreported subunit, PsaX2, which stabilizes the photosystem I complex and shapes pigment geometry and energetics to enable the formation of red forms. Last, we show that the protein modifications responsible for binding and tuning these red forms are widespread across the genus but not within the model MBIC11017 strain. Far-red photons lie close to the energetic limit of oxygenic photosynthesis; their efficient use therefore requires fine-tuning of the photosynthetic machinery. To our knowledge, our findings provide the structural and mechanistic basis of one of the most red-shifted photosystem I complexes identified to date, highlighting a distinct adaptive strategy in far-red light environments and offering design principles for extending photosynthesis in crops into the infrared.
PubMed: 42268959
DOI: 10.1126/sciadv.aed7355
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (2.63 Å)
Structure validation

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PDB entries from 2026-07-08

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