9S4Y

AcuB from Geobacillus stearothermophilus with Ap4A

Summary for 9S4Y

• Entry DOI: 10.2210/pdb9s4y/pdb
• Descriptor: AcuB from Geobacillus stearothermophilus, BIS(ADENOSINE)-5'-TETRAPHOSPHATE, CHLORIDE ION (3 entities in total)
• Functional Keywords: repressor, acetoin utilization operon, dna binding protein
• Biological source: Bacillus subtilis subsp. subtilis str. 168
• Total number of polymer chains: 2
• Total formula weight: 51274.95

Authors

Janetzky, M.,Palm, G.J.,Lammers, M. (deposition date: 2025-07-28, release date: 2026-02-25, Last modification date: 2026-05-20)

Primary citation

Janetzky, M.,Geist, N.,Schulze, S.,Ruckert, H.,Gatzemeyer, K.,Palm, G.J.,Berndt, L.,Girbardt, B.,Weis, D.,Menyes, I.,Welsch, N.,Schweder, T.,Dorr, M.,Kemnitz, S.,Bornscheuer, U.T.,Delcea, M.,Lammers, M.
AcuB senses cellular energy charge to coordinate acetyl-CoA synthesis in bacteria.
Nat Commun, 17:-, 2026

PubMed Abstract: Bacteria adjust their metabolism to the cellular energy state. AMP-forming acetyl-CoA-synthetase AcsA generates acetyl-CoA from acetate, ATP and CoA. In Bacilli, including Bacillus subtilis and Geobacillus stearothermophilus, AcsA is reversely transcribed upstream of the acu-operon encoding for the proteins AcuA, AcuB and AcuC. Lysine-acetyltransferase AcuA uses acetyl-CoA to acetylate and inactivate AcsA, while AcuC re-activates AcsA activity by deacetylation. How the counteracting activities of AcuA and AcuC are regulated is not understood. Here, we close this gap of knowledge and perform a structure-function analyzes on AcuB. These reveal AcuB forming a scissor-shaped dimer with each monomer consisting of an N-terminal Bateman domain binding to adenine nucleotides and a C-terminal ACT domain. Structural and biochemical studies as well as molecular dynamics simulations support that AMP bound AcuB binds and inhibits AcuC. Our data describe another layer of regulation of AcsA activity in Firmicutes coordinating acetate assimilation and dissimilation by the energy sensor AcuB.

PubMed: 42031755
DOI: 10.1038/s41467-026-71006-w

Experimental method

X-RAY DIFFRACTION (3.35 Å)