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9R3A

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

This is a non-PDB format compatible entry.
Summary for 9R3A
Entry DOI10.2210/pdb9r3a/pdb
EMDB information53553
DescriptorLarge ribosomal subunit protein bL33, Small ribosomal subunit protein uS4, Small ribosomal subunit protein uS5, ... (60 entities in total)
Functional Keywordstranslation, co-translational folding, nascent chain, protein folding, ribosome
Biological sourceEscherichia coli
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Total number of polymer chains56
Total formula weight2209160.33
Authors
Jurkeviciute, G.,He, J.Z.,Enchev, R.I. (deposition date: 2025-05-03, release date: 2026-01-28)
Primary citationRoeselova, A.,Shivakumaraswamy, S.,Jurkeviciute, G.,He, J.Z.,Auburger, J.,Schmitt, J.L.,Kramer, G.,Bukau, B.,Enchev, R.I.,Balchin, D.
The ribosome synchronizes folding and assembly to promote oligomeric protein biogenesis.
Mol.Cell, 2026
Cited by
PubMed Abstract: Natural proteins often form intricate multidomain, oligomeric architectures. This presents a prima facie challenge to cellular homeostasis, as topologically complex proteins seldom refold efficiently in vitro. Here, we show that the efficient folding and assembly of the five-domain homotetramer β-galactosidase is obligatorily coupled to its synthesis on the ribosome, and we define the underlying mechanisms. During refolding from a denaturant, maturation of the catalytic domain is frustrated. Assembly outpaces monomer folding, and non-native oligomers accumulate. Efficient de novo folding is characterized by segmental domain folding, shaped by the binding of a nascent amphipathic helix to a cryptic pocket on uL23 on the ribosome surface. Homomer assembly also initiates cotranslationally via recruitment of a full-length subunit to the nascent polypeptide, and the failure to do so results in misassembly. Our results reveal how the ribosome can dictate the timing of folding and assembly to enable efficient biogenesis of a topologically complex protein.
PubMed: 41558483
DOI: 10.1016/j.molcel.2025.12.022
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (2.86 Å)
Structure validation

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PDB entries from 2026-01-28

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