9Q3V
Cryo EM structure of elk ACE2 in complex with XBB 1.5 spike RBD
Summary for 9Q3V
| Entry DOI | 10.2210/pdb9q3v/pdb |
| Related | 9Q3U |
| EMDB information | 72208 |
| Descriptor | Spike protein, Angiotensin-converting enzyme 2, 2-acetamido-2-deoxy-beta-D-glucopyranose (3 entities in total) |
| Functional Keywords | sars-cov-2, cervidae, ace2 receptor, viral host interaction, host susceptibility, viral protein |
| Biological source | Severe acute respiratory syndrome coronavirus 2 More |
| Total number of polymer chains | 2 |
| Total formula weight | 98486.88 |
| Authors | |
| Primary citation | Espada, C.,Ye, K.,Long, Y.,Pasai, K.,DeLiberto, T.J.,Heale, J.,Wiese, R.,Yang, Q.,Zhou, M.,Streich, S.,Tao, Y.J.,Chandler, J.C.,Wan, X.F. Species- and variant-specific ACE2 compatibility shapes SARS-CoV-2 spillover potential in North American cervids. Nat Commun, 2026 Cited by PubMed Abstract: Free-ranging white-tailed deer (WTD) are established SARS-CoV-2 reservoirs, but the susceptibility of other cervid species remains unclear. Here we integrate receptor analysis, structural modeling, and field surveillance to assess SARS-CoV-2 susceptibility across North American cervids. We identify species- and variant-specific differences in ACE2-spike compatibility. Elk ACE2 exhibits weak binding to the ancestral strain (Wuhan-Hu-1) and Delta spike receptor-binding domains (RBDs), likely due to a unique K31N substitution. In contrast, it shows stronger binding to Alpha, Beta, Gamma, and Omicron RBDs containing N501Y. Biophysical assays, gel filtration chromatography, and cryo-EM confirm stable complex formation between elk ACE2 and Alpha RBD, but not RBD from the ancestral strain. Despite weak binding, elk ACE2 supports viral entry and replication in vitro. However, surveillance revealed limited evidence of infection in the United States, contrasting with widespread WTD transmissions. These findings demonstrate that ACE2 compatibility alone is insufficient to predict reservoir potential and provide a framework for assessing species susceptibility to emerging coronaviruses. PubMed: 41957014DOI: 10.1038/s41467-026-71623-5 PDB entries with the same primary citation |
| Experimental method | ELECTRON MICROSCOPY (3.3 Å) |
Structure validation
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