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9Q33

Cereblon Ternary Complex with Blimp1 and compound 5

This is a non-PDB format compatible entry.
Summary for 9Q33
Entry DOI10.2210/pdb9q33/pdb
EMDB information72178
DescriptorPR domain zinc finger protein 1, Protein cereblon, ZINC ION, ... (4 entities in total)
Functional Keywordsliganded cereblon ligase substrate, ligase
Biological sourceHomo sapiens (human)
More
Total number of polymer chains2
Total formula weight73311.40
Authors
Watson, E.R. (deposition date: 2025-08-15, release date: 2026-01-14)
Primary citationSimmons, B.J.,Groocock, L.,Moreno, J.,Peters, D.S.,Hughes, M.E.,Veeravalli, V.,Crawford, J.M.,Chalkley, M.,Griffith, M.,Plooster, M.,Hu, B.,Gamez, J.,Leisten, J.,Barnes, M.J.,Chinn, J.,Deb, G.,Modi, H.,Katepalli, M.,Weiss, D.,Won, W.,Sun, Z.,Yu, S.,Reid, C.,Donnell, A.F.,Li, L.,Watson, E.R.,Perrin-Ninkovic, S.,Shi, L.,Narla, R.K.,Zapf, C.W.,Bence, N.,Lopez-Girona, A.,Riggs, J.R.
Discovery and Characterization of Novel BLIMP-1 Heterobifunctional Ligand-Directed Degraders.
J.Med.Chem., 68:25385-25402, 2025
Cited by
PubMed Abstract: B-lymphocyte-induced maturation protein 1 (BLIMP-1/PRDM1) is a master transcriptional repressor essential for terminal differentiation of activated B-cells into bone-marrow resident plasma cells. Multiple myeloma (MM) is a plasma cell malignancy wherein the BLIMP-1 regulon remains critical to support basal cell functions, such as an elevated metabolic state and immunoglobulin production that underlie disease manifestation and tumor cell proliferation. It is predicted that perturbation of BLIMP-1 will significantly impact tumor cell homeostasis and ultimately reduce MM cell survival. Herein, we describe the discovery and optimization of the first orally bioavailable BLIMP-1 heterobifunctional ligand-directed degrader (LDD) and demonstration of the expected antitumor response and immunomodulatory biology following BLIMP-1 degradation using preclinical in vivo MM models.
PubMed: 41284831
DOI: 10.1021/acs.jmedchem.5c02363
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (3.2 Å)
Structure validation

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