9PNK
Crystal structure of the GH29-like fucosidase FucWf4 in complex with fucose
Summary for 9PNK
| Entry DOI | 10.2210/pdb9pnk/pdb |
| Descriptor | Alpha-L-fucosidase, beta-L-fucopyranose, MAGNESIUM ION, ... (4 entities in total) |
| Functional Keywords | fucose, fucoidan, glycoside hydrolase, fucosidase, cazyme., hydrolase |
| Biological source | Wenyingzhuangia fucanilytica |
| Total number of polymer chains | 2 |
| Total formula weight | 121646.39 |
| Authors | Higgins, M.A. (deposition date: 2025-07-21, release date: 2025-11-05, Last modification date: 2025-11-12) |
| Primary citation | Bailey, B.,Winchester, A.,McClain, D.,Clingaman, M.,Higgins, M.A. Structural insights into a fucosidase involved in fucoidan degradation. Acta Crystallogr.,Sect.F, 81:459-466, 2025 Cited by PubMed Abstract: Fucoidan is a complex, sulfated polysaccharide primarily found in brown algae, where it plays important structural and protective roles. Due to its abundance in marine ecosystems, many marine bacteria have evolved diverse and specialized enzymatic systems to degrade fucoidan, although the functions and structures of many of these enzymes remain uncharacterized. Here, we describe the structure of a newly identified fucosidase, FucWf4, which cleaves terminal, unsulfated fucose residues from linear, sulfated fucoidan. FucWf4 does not belong to any known glycoside hydrolase (GH) family, but shows the greatest similarity to GH29 fucosidases. We present the first crystal structure of FucWf4 in complex with fucose, revealing a unique C-terminal domain that resembles a carbohydrate-binding module, although it may have lost its carbohydrate-binding capacity and is absent from canonical GH29 enzymes. Docking experiments suggest the presence of a -1 subsite containing a potential sulfate-binding pocket, which may underlie the substrate specificity of the enzyme. Furthermore, sequence analysis of FucWf4 homologs reveals two distinct clades, likely corresponding to functionally divergent groups. Together, these findings provide new insights into the molecular basis of fucoidan recognition and degradation by this novel enzyme subfamily, laying the groundwork for future functional and structural studies. PubMed: 41114657DOI: 10.1107/S2053230X25008842 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.19 Å) |
Structure validation
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