9NTP
EGFR kinase domain (T790MV948R) in complex with a strain-release covalent inhibitor
This is a non-PDB format compatible entry.
Summary for 9NTP
| Entry DOI | 10.2210/pdb9ntp/pdb |
| Descriptor | Epidermal growth factor receptor, 1,2-ETHANEDIOL, N-[4-(3-chloro-4-fluoroanilino)-7-{[(3S)-oxolan-3-yl]oxy}quinazolin-6-yl]cyclobutanesulfonamide, ... (4 entities in total) |
| Functional Keywords | covalent, inhibitor, complex, cancer, mutation, transferase |
| Biological source | Homo sapiens (human) |
| Total number of polymer chains | 1 |
| Total formula weight | 38287.68 |
| Authors | Schonbrunn, E.,Sun, L. (deposition date: 2025-03-18, release date: 2026-07-29, Last modification date: 2026-08-05) |
| Primary citation | Shultz, Z.P.,Lee-Sam, A.,Chang, Y.P.,Sun, L.,Grassie, D.,Gabellini, A.,Pedretty, K.,Scattolin, T.,Izumi, V.,Fang, B.,Sansil, S.,Kakumanu, R.,Wojtas, L.,Koomen, J.,Schonbrunn, E.,Monastyrskyi, A.,Duckett, D.,Lopchuk, J.M. Late-stage functionalization with strain-release warheads enables tunable covalent inhibition. Science, 393:408-416, 2026 Cited by PubMed Abstract: Covalent inhibition continues to gain momentum as a strategy for selective protein modulation in both therapeutic and chemical biology contexts. Covalent reactive groups (CRGs) typically engage nucleophilic residues such as cysteine, resulting in targeted protein inactivation. However, common electrophiles such as acrylamides often suffer from nonselective reactivity, leading to off-target effects and toxicity. To overcome these limitations, we developed a modular sulfur(IV) reagent platform for the mild, late-stage installation of sulfonyl- and sulfonimidoyl-bicyclobutane motifs with complete cysteine selectivity. This methodology enables access to diverse sulfur(VI) CRGs with tunable strain-release reactivity. Incorporation into US Food and Drug Administration-approved covalent inhibitors demonstrated effective bioisosteric replacement of acrylamides and the potential of strain-release CRGs for selective protein targeting. Preclinical studies in mice have validated this approach, highlighting its promise for next-generation covalent drug design. PubMed: 42490492DOI: 10.1126/science.adx7219 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (1.55 Å) |
Structure validation
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