9NS1

Intermediate state of Src kinase domain

Summary for 9NS1

• Entry DOI: 10.2210/pdb9ns1/pdb
• NMR Information: BMRB: 31234
• Descriptor: Proto-oncogene tyrosine-protein kinase Src (1 entity in total)
• Functional Keywords: intermediate state, kinase src, signaling protein
• Biological source: Homo sapiens (human)
• Total number of polymer chains: 1
• Total formula weight: 32739.64

Authors

Cui, Y.,Ali, R.,Clay, M.,Rossi, P.,Liu, A.,Yang, D.,Gough, N.,Geiger, T.,Kalodimos, C. (deposition date: 2025-03-15, release date: 2026-01-21)

Primary citation

Cui, Y.,Ali, R.,Clay, M.,Rossi, P.,Liu, A.,Yang, D.,Gough, N.R.,Geiger, T.,Kalodimos, C.G.
Conformational landscape adaptations enable processive phosphorylation by Src family kinases.
Science, 390:eadw8310-eadw8310, 2025

PubMed Abstract: Processive phosphorylation by kinases enables the rapid multisite modification of signaling hubs, serving to integrate signals during time-sensitive cellular events. To achieve processivity, multiple catalytic cycles must occur before substrate dissociation, making rapid turnover rates essential. Src family kinases processively phosphorylate multisite substrates. Using nuclear magnetic resonance spectroscopy, we identified a transient intermediate state within the Src conformational ensemble, positioned between its active and inactive states. This intermediate state facilitates the rapid release of adenosine diphosphate following adenosine triphosphate hydrolysis, ensuring efficient catalytic turnover. Depletion of the intermediate state abrogated processive phosphorylation by Src, Lck, and Hck, impairing function. These findings reveal that the conformational ensemble of Src family kinases has evolved to incorporate a transient state that underpins their capacity for processive substrate phosphorylation.

PubMed: 41411430
DOI: 10.1126/science.adw8310

Experimental method

SOLUTION NMR