9M8H
Crystal structure of wild-type PETase
Summary for 9M8H
| Entry DOI | 10.2210/pdb9m8h/pdb |
| Descriptor | Poly(ethylene terephthalate) hydrolase, GLYCEROL (3 entities in total) |
| Functional Keywords | pet-degrading hydrolase, ideonella sakaiensis, hydrolase |
| Biological source | Piscinibacter sakaiensis |
| Total number of polymer chains | 1 |
| Total formula weight | 28011.02 |
| Authors | |
| Primary citation | Chek, M.F.,Kawano, E.,Sanuki, R.,Nishimura, K.,Hachisuka, S.I.,Hakoshima, T.,Yoshida, S. Enhancing the specificity of a thermostable PET hydrolase toward aromatic polyesters via Piscinibacter sakaiensis PETase-inspired mutations. Int.J.Biol.Macromol., 338:149745-149745, 2025 Cited by PubMed Abstract: The biodegradation of poly(ethylene terephthalate) (PET), a widely used thermoplastic, represents a significant environmental challenge. Microbial PET hydrolytic enzymes (PHEs) are being actively explored as biocatalysts for sustainable PET recycling. Here, we investigated the molecular basis of substrate specificity in PET hydrolase (PETase) from Piscinibacter sakaiensis (formerly Ideonella sakaiensis), a type IIb PHE with higher PET specificity and hydrolytic activity at mesophilic temperatures compared to other PHEs. Structural comparison with the thermostable leaf-branch compost cutinase (LCC, type I) revealed four distinct active-site residues (W159, S238, C203, C239 in PETase) between PETase and LCC. Several PETase-inspired LCC mutants showed markedly increased PET specificity, identifying residues that enhance substrate recognition in type I scaffolds. While PETase is known to hydrolyze poly(ethylene-2,5-furandicarboxylate) (PEF), a bio-based PET alternative, we found that its selectivity for PEF over PET is markedly higher than that of LCC. Notably, the LCC mutant L-H164W exhibited PETase-like behavior, significantly enhancing PEF hydrolysis without compromising PET activity. To elucidate this mechanism, we determined the first crystal structure of PETase complexed with bis(2-hydroxyethyl) furan-2,5-dicarboxylate (BHEF), a PEF moiety. The structure suggested an alternative catalytic mode involving cleavage at subsite IIa, supported by docking simulations showing that H164W promotes optimal PEF positioning in LCC. These findings highlight the role of PETase-specific residues in defining polyester specificity and provide a framework for engineering thermostable PHEs with enhanced activity toward aromatic polyesters such as PET and PEF. PubMed: 41418965DOI: 10.1016/j.ijbiomac.2025.149745 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (1.3 Å) |
Structure validation
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