9KZC

Cryo-EM structure of the LGI1 LRR-LGI1 EPTP-ADAM22 ECD complex

Summary for 9KZC

• Entry DOI: 10.2210/pdb9kzc/pdb
• EMDB information: 62659
• Descriptor: Disintegrin and metalloproteinase domain-containing protein 22, Leucine-rich glioma-inactivated protein 1, CALCIUM ION (3 entities in total)
• Functional Keywords: epilepsy, synapse, adam, eptp, ed40, cell adhesion
• Biological source: Homo sapiens (human); More
• Total number of polymer chains: 3
• Total formula weight: 179044.98

Authors

Yamaguchi, T.,Okatsu, K.,Kubota, M.,Mitsumori, A.,Yamagata, A.,Fukai, S. (deposition date: 2024-12-10, release date: 2025-06-25, Last modification date: 2025-07-16)

Primary citation

Yamaguchi, T.,Okatsu, K.,Kubota, M.,Mitsumori, A.,Yamagata, A.,Fukata, Y.,Fukata, M.,Shibata, M.,Fukai, S.
Structural insights into heterohexameric assembly of epilepsy-related ligand-receptor complex LGI1-ADAM22.
Elife, 14:-, 2025

PubMed Abstract: Leucine-rich glioma-inactivated 1 protein (LGI1) is a secreted neuronal protein consisting of the N-terminal leucine-rich repeat (LRR) and C-terminal epitempin-repeat (EPTP) domains. LGI1 is linked to epilepsy, a neurological disorder that can be caused by genetic mutations of genes regulating neuronal excitability (e.g. voltage- or ligand-gated ion channels). ADAM22 is a membrane receptor that binds to LGI1 extracellularly and interacts with AMPA-type glutamate receptors via PSD-95 intracellularly to maintain normal synaptic signal transmission. Structural analysis of the LGI1-ADAM22 complex is important for understanding the molecular mechanism of epileptogenesis and developing new therapies against epilepsy. We previously reported the crystal structure of a 2:2 complex consisting of two molecules of LGI1 and two molecules of the ADAM22 ectodomain (ECD), which is suggested to bridge neurons across the synaptic cleft. On the other hand, multiangle light scattering, small-angle X-ray scattering, and cryo-electron microscopy (cryo-EM) analyses have suggested the existence of a 3:3 complex consisting of three molecules of LGI1 and three molecules of ADAM22. In the previous cryo-EM analysis, many observed particles were in a dissociated state, making it difficult to determine the three-dimensional (3D) structure of the 3:3 complex. In this study, we stabilized the 3:3 LGI1-ADAM22 complex using chemical cross-linking and determined the cryo-EM structures of the LGI1-LGI1-ADAM22 and 3:3 LGI1-ADAM22 complexes at 2.78 Å and 3.79 Å resolutions, respectively. Furthermore, high-speed atomic force microscopy (HS-AFM) visualized the structural features and flexibility of the 3:3 LGI1-ADAM22 complex in solution. We discuss new insights into the interaction modes of the LGI1-ADAM22 higher-order complex and the structural properties of the 3:3 LGI1-ADAM22 complex.

PubMed: 40601686
DOI: 10.7554/eLife.105918

Experimental method

ELECTRON MICROSCOPY (2.78 Å)