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9KRG

Cryo-EM structure of human pannexin-3 heptamer

Summary for 9KRG
Entry DOI10.2210/pdb9krg/pdb
Related9KOM
EMDB information62478 62526
DescriptorPannexin-3 (1 entity in total)
Functional Keywordspannexin, innexin, transport protein
Biological sourceHomo sapiens (human)
Total number of polymer chains1
Total formula weight45965.45
Authors
Tsuyama, T.,Yokoyama, K. (deposition date: 2024-11-27, release date: 2025-01-15)
Primary citationTsuyama, T.,Teramura, R.,Mitsuoka, K.,Kishikawa, J.I.,Yokoyama, K.
Cryo-EM structure of the human Pannexin-3 channel.
Biochem.Biophys.Res.Commun., 745:151227-151227, 2025
Cited by
PubMed Abstract: Pannexin-3 (PANX3) is a member of the pannexin family of large-pore, ATP-permeable channels conserved across vertebrates. PANX3 contributes to various developmental and pathophysiological processes by permeating ATP and Ca ions; however, the structural basis of PANX3 channel function remains unclear. Here, we present the cryo-EM structure of human PANX3 at 2.9-3.2 Å. The PANX3 channel is heptameric and forms a transmembrane pore along the central symmetric axis. The narrowest constriction of the pore is composed of an isoleucine ring located in the extracellular region, and its size is comparable to that of other pannexins. A structural variability analysis revealed prominent structural dynamics in intracellular regions. Our structural studies provide a foundation for understanding the detailed properties of pannexin channels.
PubMed: 39721314
DOI: 10.1016/j.bbrc.2024.151227
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (2.9 Å)
Structure validation

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