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9KG2

Cryo-EM structure of apo form atABCB19 in lipid nanodisc

Summary for 9KG2
Entry DOI10.2210/pdb9kg2/pdb
EMDB information62306
DescriptorABC transporter B family member 19 (1 entity in total)
Functional Keywordsabcb19, plant hormone transport, apo form, membrane protein
Biological sourceArabidopsis thaliana x Arabidopsis lyrata
Total number of polymer chains1
Total formula weight136932.56
Authors
Liu, Y.,Liao, M. (deposition date: 2024-11-07, release date: 2025-05-21, Last modification date: 2025-12-03)
Primary citationLiu, Y.,Liao, M.
Conformational cycle and small-molecule inhibition mechanism of a plant ABCB transporter in lipid membranes.
Sci Adv, 11:eadv9721-eadv9721, 2025
Cited by
PubMed Abstract: In plants, ATP-binding cassette (ABC) transporters are crucial for nutrient uptake, phytohormone transport, and environmental response. It is of great interest to understand the mechanisms of these transporters and develop small-molecule modulators to regulate plant growth. ABCB19 was recently shown to transport brassinosteroid, shaping hormone dynamics and plant architecture. However, the conformational cycle and inhibitor mechanism of ABCB transporters remain elusive. We reconstituted ABCB19 into lipid nanodiscs, where activity was drastically higher than in detergents, and determined its cryo-electron microscopy structures in substrate-free, substrate-bound, vanadate-trapped, and inhibitor-bound states. Inward-facing ABCB19 moved inward upon substrate binding and fully closed with vanadate trapping, unexpectedly temperature dependent. Two inhibitor molecules locked ABCB19 in the inward-facing conformation. Mutagenesis identified key residues for substrate and inhibitor binding, revealing differential contributions to transporter function and inhibition. These results deepen knowledge of plant ABCB transporters, laying a foundation for targeted manipulation to enhance plant resilience and productivity.
PubMed: 40512840
DOI: 10.1126/sciadv.adv9721
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (4.1 Å)
Structure validation

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