9IXA

Cryo-EM structure of chikungunya virus glycoprotein E1-E2 with C34 Fab.

This is a non-PDB format compatible entry.

Summary for 9IXA

• Entry DOI: 10.2210/pdb9ixa/pdb
• EMDB information: 60966
• Descriptor: CHIKV E2, CHIKV E1, C34 Fab, Heavy Chain, ... (5 entities in total)
• Functional Keywords: chikungunya, antibody, antifungal protein
• Biological source: Chikungunya virus; More
• Total number of polymer chains: 4
• Total formula weight: 148514.97

Authors

Han, X.,Ji, C.,Wang, F.,Tian, S.,Gao, F.G.,Yan, J. (deposition date: 2024-07-26, release date: 2025-11-19)

Primary citation

Han, X.,Ji, C.,Tian, S.,Wang, F.,Cao, G.P.,Li, D.,Duan, X.,Tong, Z.,Qi, J.,Wang, Q.,Huang, Q.,Zhan, B.D.,Gao, G.F.,Yan, J.
Neutralizing antibodies against Chikungunya virus and structural elucidation of their mechanism of action.
Nat Commun, 16:9682-9682, 2025

PubMed Abstract: Chikungunya virus (CHIKV) is a mosquito-borne alphavirus that causes febrile illness and acute or chronic arthritis. Most therapeutics are still in the pre-clinical stage. In this study, we report the isolation of two neutralizing antibodies, C34 and C37, from a convalescent patient and investigate their mechanisms of action. Both C34 and C37 exhibit high neutralizing activities in vitro and demonstrate protective effects against CHIKV in a female mouse model. Our functional and structural studies reveal a mechanism that inhibits multiple stages of the virus infection cycle. Both antibodies bind with high affinity to an epitope spanning E2, E1, and the connecting β-strands, facilitating intra- and inter-virion crosslinking. Cryo-EM structures additionally identify a minor patch located beneath the E3 binding site on E2, which is allosterically exposed upon E3 dissociation during virus maturation. Functional and structural data further suggest that binding to the CHIKV receptor, Mxra8, is obstructed due to a clash between the antibodies and the stalk region of Mxra8. Our results highlight the potential of antibody-based therapeutics against CHIKV and elucidate the mechanisms of monoclonal antibody protection.

PubMed: 41184282
DOI: 10.1038/s41467-025-64687-2

Experimental method

ELECTRON MICROSCOPY (3.11 Å)