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9HUG

Inward-open structure of human glycine transporter 2 in substrate-free state

Summary for 9HUG
Entry DOI10.2210/pdb9hug/pdb
EMDB information52409 52410 52411
DescriptorSodium- and chloride-dependent glycine transporter 2, CHOLESTEROL, CHLORIDE ION (3 entities in total)
Functional Keywordstransport protein, slc6a5, neurotransmitter/sodium symporter, sodium- and chloride-dependent glycine transporter 2, membrane protein
Biological sourceHomo sapiens (human)
Total number of polymer chains1
Total formula weight69784.78
Authors
Primary citationCantwell Chater, R.P.,Peiser-Oliver, J.,Pati, T.K.,Quinn, A.S.,Lotsaris, I.,Frangos, Z.J.,Anderson, K.E.,Tischer, A.E.,Williams-Noonan, B.J.,Aubrey, K.R.,O'Mara, M.L.,Michaelides, M.,Mohammadi, S.A.,Cioffi, C.L.,Vandenberg, R.J.,Shahsavar, A.
A reversible allosteric inhibitor of GlyT2 for neuropathic pain without on-target side effects.
Nat Commun, 2026
Cited by
PubMed Abstract: Chronic neuropathic pain, caused by nerve damage or disease, is increasing in prevalence, but current treatments are ineffective and over-reliant on opioids. The neuronal glycine transporter, GlyT2, regulates inhibitory glycinergic neurotransmission and represents a promising target for new analgesics. However, most GlyT2 inhibitors cause significant side effects, in part due to irreversible inhibition at analgesic doses. Here we develop a reversible inhibitor of GlyT2, RPI-GLYT2-82, and identify its binding site by determining cryo-EM structures of human GlyT2. We capture three fundamental conformational states of GlyT2 in the substrate-free state, and bound to either glycine, RPI-GLYT2-82 or the pseudo-irreversible inhibitor ORG25543. We demonstrate that RPI-GLYT2-82 dissociates from GlyT2 faster than ORG25543, providing analgesia in mouse neuropathic pain models without on-target side-effects or addiction liability. Our data provide a mechanistic understanding of allosteric inhibition of glycine transport, enabling structure-based design of non-opioid analgesics.
PubMed: 41698908
DOI: 10.1038/s41467-026-69616-5
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (2.97 Å)
Structure validation

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PDB entries from 2026-02-25

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