9FVK

Crystal structure of amyloidogenic light chain AL-55 in open conformation.

Summary for 9FVK

• Entry DOI: 10.2210/pdb9fvk/pdb
• Descriptor: AL55, DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, ... (7 entities in total)
• Functional Keywords: light chain, amyloidosis, immune system
• Biological source: Homo sapiens
• Total number of polymer chains: 3
• Total formula weight: 70605.93

Authors

Polsinelli, I.,Puri, S.,Broggini, L.,Gadda, A.,Petralia, U.,Ricagno, S. (deposition date: 2024-06-27, release date: 2025-07-09, Last modification date: 2026-01-28)

Primary citation

Puri, S.,Gadda, A.,Polsinelli, I.,Barzago, M.M.,Toto, A.,Sriramoju, M.K.,Visentin, C.,Broggini, L.,Valerie Bonnet, D.M.,Russo, R.,Chaves-Sanjuan, A.,Merlini, G.,Nuvolone, M.,Palladini, G.,Gianni, S.,Hsu, S.D.,Diomede, L.,Ricagno, S.
The Critical Role of the Variable Domain in Driving Proteotoxicity and Aggregation in Full-length Light Chains.
J.Mol.Biol., 437:168958-168958, 2025

PubMed Abstract: Light chain (AL) amyloidosis is the most common systemic amyloid disease characterized by abnormal accumulation of amyloid fibrils derived from immunoglobulin light chains (LCs). Both full-length (FL) LCs and their isolated variable (VL) and constant (CL) domains contribute to amyloid deposits in multiple organs, with the VL domain predominantly forming the fibril core. However, the role and interplay of these domains in amyloid aggregation and toxicity are poorly understood. Characterizing the amyloidogenic λ6-LC AL55, this study explores the properties of both FL and isolated domains and compares them with the available patient-derived data. FL AL55 biophysical features result from the interplay between its VL and CL domains where the limited VL-CL interface might play a major role. Slow refolding kinetic of FL confirms the unfolded VL domain as a kinetic trap possibly shifting the process towards misfolding. The X-ray structure of FL AL55 shows that VL domains may detach from the native dimeric assembly and establish non-native interdimeric interfaces. Additionally, isolated VL domains display significantly lower soluble toxicity compared to FL and do not form fibrils similar to those found ex vivo. Thus the data obtained in this work allowed us to draw a molecular sketch of the aggregation pathway for amyloidogenic LCs.

PubMed: 39842712
DOI: 10.1016/j.jmb.2025.168958

Experimental method

X-RAY DIFFRACTION (2.64 Å)