9EN4

VP8* domain of the spike protein VP4 from bovine P[3] strain of rotavirus species C

Summary for 9EN4

• Entry DOI: 10.2210/pdb9en4/pdb
• Descriptor: Outer capsid protein VP8* (2 entities in total)
• Functional Keywords: rotavirus, spike protein, host-virus identification, viral protein
• Biological source: Bovine rotavirus C
• Total number of polymer chains: 2
• Total formula weight: 37611.50

Authors

Paredes-Martinez, F.,Casino, P. (deposition date: 2024-03-12, release date: 2025-08-20, Last modification date: 2025-12-31)

Primary citation

Navarro-Lleo, N.,Ramirez-Cardenas, J.,Paredes-Martinez, F.,Serna, S.,Gozalbo-Rovira, R.,Munoz-Garcia, J.C.,Reichardt, N.C.,Casino, P.,Angulo, J.,Rodriguez-Diaz, J.,Buesa, J.
Interaction of the VP8* protein of a bovine rotavirus C with the H type-2 antigen and its precursor N-acetyl-lactosamine.
Int.J.Biol.Macromol., 337:149621-149621, 2025

PubMed Abstract: Rotaviruses (RVs) are the main cause of viral diarrhea among infants, small children, and the young of many animal species. Histo-blood group antigens (HBGAs) are potential RV receptors and glycan composition on mucous surfaces influences host susceptibility and cross-species virus transmission. RVs exhibit genotype-dependent glycan binding and differences are due to sequence modifications in the VP8* domain of the spike protein VP4. Nevertheless, the molecular bases for this genotype-dependent glycan specificity, especially in non-A RVs, are not thoroughly understood. This study delves into how genotypic variations configure a novel binding site in the VP8* of a bovine P[3] rotavirus species C (RVC) strain to recognize H type-2 antigen (H2) and its precursor N-acetyl-lactosamine (LacNAc) using glycan binding assays, crystallography, and STD NMR. Results reveal a specific interaction of bovine P[3] RVC VP8* with H2 and LacNAc, more strongly with the latter. In the P[3] RVC VP8*-H2 interaction, the N-acetyl glucosamine moiety displays significant interaction, while galactose participates moderately and fucose binds weakly. Moreover, the bovine VP8* structure, resolved at 3 Å, shows specific structural features which differ from human RVC, as it contains two additional β-strands (β1 and β2) contributing to β-sheet2 and conformational changes that widens the cleft to allow different carbohydrate binding modes. These subtle changes in both sequence and structure explain the H2 precursor recognition, which is abundant in the human neonate intestine and in human and bovine milk, providing insights into P[3] RVC tropism and its potential zoonotic transmission.

PubMed: 41386619
DOI: 10.1016/j.ijbiomac.2025.149621

Experimental method

X-RAY DIFFRACTION (3 Å)