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9EL0

ML2-SA1 bound TRPML2 in a pre-open state

This is a non-PDB format compatible entry.
Summary for 9EL0
Entry DOI10.2210/pdb9el0/pdb
EMDB information48143
DescriptorMucolipin-2, (3aS,4S,7R,7aS)-3-(2,6-dichlorophenyl)-3a,4,5,6,7,7a-hexahydro-4,7-methano-1,2-benzoxazole (2 entities in total)
Functional Keywordstrpml, calcium channel, ion transport, membrane protein
Biological sourceHomo sapiens (human)
Total number of polymer chains4
Total formula weight265193.85
Authors
Schmiege, P.,Li, X. (deposition date: 2024-12-03, release date: 2025-06-18, Last modification date: 2026-01-07)
Primary citationSchmiege, P.,Jaslan, D.,Fine, M.,Sadanandan, N.P.,Hatton, A.,Elghobashi-Meinhardt, N.,Grimm, C.,Li, X.
TRPML2 in distinct states reveals the activation and modulation principles of the TRPML family.
Nat Commun, 16:5325-5325, 2025
Cited by
PubMed Abstract: TRPML2 activity is critical for endolysosomal integrity and chemokine secretion, and can be modulated by various ligands. Interestingly, two ML-SI3 isomers regulate TRPML2 oppositely. The molecular mechanism underlying this unique isomeric preference as well as the TRPML2 agonistic mechanism remains unknown. Here, we present six cryo-EM structures of human TRPML2 in distinct states revealing that the π-bulge of the S6 undergoes a π-α transition upon agonist binding, highlighting the remarkable role of the π-bulge in ion channel regulation. Moreover, we identify that PI(3,5)P allosterically affects the pose of ML2-SA1, a TRPML2 specific activator, resulting in an open channel without the π-α transition. Functional and structural studies show that mutating the S5 of TRPML1 to that of TRPML2 enables the mutated TRPML1 to be activated by (+)ML-SI3 and ML2-SA1. Thus, our work elucidates the activation mechanism of TRPML channels and paves the way for the development of selective TRPML modulators.
PubMed: 40527873
DOI: 10.1038/s41467-025-60710-8
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (2.45 Å)
Structure validation

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