9DAN

STING oligomer bound to PI(4,5)P2

This is a non-PDB format compatible entry.

Summary for 9DAN

• Entry DOI: 10.2210/pdb9dan/pdb
• EMDB information: 46694
• Descriptor: Stimulator of interferon genes protein, 4-({[4-(2-tert-butyl-5,5-dimethyl-1,3-dioxan-2-yl)phenyl]methyl}amino)-3-methoxybenzoic acid, (2R)-3-{[(S)-hydroxy{[(1R,2R,3S,4R,5R,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl di[(9Z)-octadec-9-enoate], ... (5 entities in total)
• Functional Keywords: sting, lipid, oligomerization, signaling protein, signaling protein-activator complex, signaling protein/activator
• Biological source: Homo sapiens (human)
• Total number of polymer chains: 4
• Total formula weight: 163437.06

Authors

Li, J.,Zhang, X.,Bai, X. (deposition date: 2024-08-22, release date: 2025-12-17, Last modification date: 2026-02-18)

Primary citation

Li, J.,Tan, J.X.,Chen, Z.J.,Zhang, X.,Bai, X.C.
Regulation of STING activation by phosphoinositide and cholesterol.
Nature, 2026

PubMed Abstract: Stimulator of interferon genes (STING) is an essential adaptor in the cytosolic DNA-sensing innate immune pathway. STING is activated by cyclic GMP-AMP (cGAMP) produced by the DNA sensor cGAMP synthase (cGAS). cGAMP-induced high-order oligomerization and translocation of STING from the endoplasmic reticulum to the Golgi and post-Golgi vesicles are critical for STING activation. Other studies have shown that phosphatidylinositol phosphates (PtdInsPs) and cholesterol also have important roles in STING activation, but the underlying mechanisms remain unclear. Here we demonstrate that cGAMP-induced high-order oligomerization of STING is enhanced strongly by phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P and PtdIns(4,5)P, and by PtdIns4P to a lesser extent. Our cryo-electron microscopy structures reveal that PtdInsPs together with cholesterol bind at the interface between STING dimers, directly promoting the high-order oligomerization. The structures also provide an explanation for the preference of the STING oligomer to different PtdInsPs. Mutational and biochemical analyses confirm the binding modes of PtdInsPs and cholesterol and their roles in STING activation. Our findings shed light on the regulatory mechanisms of STING mediated by specific lipids, which may underlie the role of intracellular trafficking in dictating STING signalling.

PubMed: 41639452
DOI: 10.1038/s41586-025-10076-0

Experimental method

ELECTRON MICROSCOPY (2.6 Å)