9KVI

A Cryo_EM structure of 5_HT1A complex with DMT

This is a non-PDB format compatible entry.

Summary for 9KVI

• Entry DOI: 10.2210/pdb9kvi/pdb
• EMDB information: 62595
• Descriptor: Guanine nucleotide-binding protein G(i) subunit alpha-1, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, SCFV16, ... (10 entities in total)
• Functional Keywords: gpcr, 5_ht1a, membrane protein
• Biological source: Homo sapiens (human); More
• Total number of polymer chains: 5
• Total formula weight: 158033.48

Authors

Yuan, Q.,Li, S. (deposition date: 2024-12-05, release date: 2025-12-03, Last modification date: 2026-06-17)

Primary citation

Li, S.J.,Yuan, Q.N.,Wu, W.Y.,Chen, Z.H.,Chen, D.,Shan, H.,Chu, Q.Y.,Hu, W.,Wu, K.,Liu, T.,Zhu, Y.Y.,Hou, L.,Zhou, J.,Duan, J.,Duan, J.A.,Xu, H.E.,Ma, H.Y.
Structural Pharmacology of Bufotenine Derivatives in Activating the 5-HT 1A Receptor for Therapeutic Potential in Depression and Anxiety.
Res, 8:0987-0987, 2025

PubMed Abstract: The 5-HT receptor is a critical target in the treatment of depression and anxiety. Bufotenine derivatives, such as 5-methoxy-,-dimethyltryptamine (5-MeO-DMT), 5-hydroxy-,-dimethyltryptamine (5-OH-DMT), and 5-hydroxy-,,-dimethyltryptamine-derived from traditional Chinese medicine-have shown antidepressant potential. However, the structural basis of their interaction with 5-HT and their pharmacological profiles remain incompletely understood. This study investigated bufotenine derivatives acting on multiple serotonin receptors, highlighting 5-HT as a key mediator of antidepressant effects while recognizing 5-HT as primarily responsible for hallucinogenic outcomes, to identify candidates with therapeutic efficacy but reduced hallucinogenic liability. We determined the cryo-electron microscopy structures of 5-HT bound to selected bufotenine derivatives. Functional assays in mice, including behavioral tests and receptor activation studies, were used to evaluate the antidepressant of each compound. Structural analysis revealed that all bufotenine derivatives engage conserved motifs within the 5-HT binding pocket, with 5-OH-DMT displaying a distinct interaction pattern. Behavioral assays showed that 5-OH-DMT and 5-MeO-DMT retained strong antidepressant and anxiolytic effects. These pharmacological differences correlate with their unique receptor binding conformation. This study delineated the structural pharmacology of bufotenine derivatives at the 5-HT receptor, identifying 5-OH-DMT and 5-MeO-DMT as promising antidepressant and anxiolytic candidates. The findings establish a molecular framework for the development of next-generation nonhallucinogenic therapeutics aimed at 5-HT.

PubMed: 41446874
DOI: 10.34133/research.0987

Experimental method

ELECTRON MICROSCOPY (2.54 Å)