8ZER

Crystal structure of the complex of Wuhan SARS-CoV-2 RBD (319-541) with P2C5 nanobody

Summary for 8ZER

• Entry DOI: 10.2210/pdb8zer/pdb
• Descriptor: Spike protein S1, Nanobody P2C5, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... (5 entities in total)
• Functional Keywords: sars-cov-2, spike glycoprotein fragment, complex with nanobody, viral protein, viral protein-immune system complex, viral protein/immune system
• Biological source: Severe acute respiratory syndrome coronavirus 2; More
• Total number of polymer chains: 10
• Total formula weight: 216770.42

Authors

Sluchanko, N.N.,Varfolomeeva, L.A.,Shcheblyakov, D.V.,Logunov, D.Y.,Gintsburg, A.L.,Popov, V.O.,Boyko, K.M. (deposition date: 2024-05-06, release date: 2024-09-04)

• Primary citation: Sluchanko, N.N.,Shcheblyakov, D.V.,Varfolomeeva, L.A.,Favorskaya, I.A.,Dolzhikova, I.V.,Korobkova, A.I.,Alekseeva, I.A.,Esmagambetov, I.B.,Derkaev, A.A.,Prokofiev, V.V.,Zorkov, I.D.,Logunov, D.Y.,Gintsburg, A.L.,Popov, V.O.,Boyko, K.M.; Structural Basis for Evasion of New SARS-CoV-2 Variants from the Potent Virus-Neutralizing Nanobody Targeting the S-Protein Receptor-Binding Domain; Biochemistry Mosc.47, 89:1260-1272, 2024; DOI: 10.1134/S0006297924070083

Experimental method

X-RAY DIFFRACTION (3.1 Å)