8ZBD

Crystal structure of Persulfide Dioxygenase from Beggiatoa leptomitoformis

Summary for 8ZBD

• Entry DOI: 10.2210/pdb8zbd/pdb
• Descriptor: MBL fold metallo-hydrolase, FE (III) ION (3 entities in total)
• Functional Keywords: beggiatoa, persulfide dioxygenase, oxidation of intracellular elemental sulfur, thiosulphate, oxidoreductase
• Biological source: Beggiatoa leptomitoformis
• Total number of polymer chains: 2
• Total formula weight: 55284.49

Authors

Gabdulkhakov, A.G.,Tishchenko, T.V.,Rudenko, T.S. (deposition date: 2024-04-26, release date: 2025-03-05)

Primary citation

Rudenko, T.S.,Trubitsina, L.I.,Terentyev, V.V.,Trubitsin, I.V.,Borshchevskiy, V.I.,Tishchenko, S.V.,Gabdulkhakov, A.G.,Leontievsky, A.A.,Grabovich, M.Y.
Mechanism of Intracellular Elemental Sulfur Oxidation in Beggiatoa leptomitoformis , Where Persulfide Dioxygenase Plays a Key Role.
Int J Mol Sci, 25:-, 2024

PubMed Abstract: Representatives of the colorless sulfur bacteria of the genus use reduced sulfur compounds in the processes of lithotrophic growth, which is accompanied by the storage of intracellular sulfur. However, it is still unknown how the transformation of intracellular sulfur occurs in representatives. Annotation of the genome of D-402 did not identify any genes for the oxidation or reduction of elemental sulfur. By searching BLASTP, two putative persulfide dioxygenase (PDO) homologs were found in the genome of . In some heterotrophic prokaryotes, PDO is involved in the oxidation of sulfane sulfur. According to HPLC-MS/MS, the revealed protein was reliably detected in a culture sample grown only in the presence of endogenous sulfur and CO. The recombinant protein from was active in the presence of glutathione persulfide. The crystal structure of recombinant PDO exhibited consistency with known structures of type I PDO. Thus, it was shown that uses PDO to oxidize endogenous sulfur. Additionally, on the basis of HPLC-MS/MS, RT-qPCR, and the study of PDO reaction products, we predicted the interrelation of PDO and Sox-system function in the oxidation of endogenous sulfur in and the connection of this process with energy metabolism.

PubMed: 39456744
DOI: 10.3390/ijms252010962

Experimental method

X-RAY DIFFRACTION (2.33 Å)