8YDZ

Cryo-EM structure of SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.5 variant) in complex with CeSPIACE, class 2

Summary for 8YDZ

• Entry DOI: 10.2210/pdb8ydz/pdb
• EMDB information: 39186
• Descriptor: Spike glycoprotein, CeSPIACE, 2-acetamido-2-deoxy-beta-D-glucopyranose (3 entities in total)
• Functional Keywords: spike protein, viral protein-inhibitor complex, viral protein/inhibitor
• Biological source: Severe acute respiratory syndrome coronavirus 2; More
• Total number of polymer chains: 6
• Total formula weight: 451390.81

Authors

Suzuki, H.,Nakamura, S.,Fujiyoshi, Y. (deposition date: 2024-02-21, release date: 2025-01-15)

• Primary citation: Nakamura, S.,Tanimura, Y.,Nomura, R.,Suzuki, H.,Nishikawa, K.,Kamegawa, A.,Numoto, N.,Tanaka, A.,Kawabata, S.,Sakaguchi, S.,Emi, A.,Suzuki, Y.,Fujiyoshi, Y.; Development of a short-peptide inhibiting any SARS-CoV-2 variants based on structural biology; To Be Published,

Experimental method

ELECTRON MICROSCOPY (5.2 Å)