8YDS

Crystal structure of the receptor binding domain of SARS-CoV-2 Delta variant spike protein in complex with Ce59

Summary for 8YDS

• Entry DOI: 10.2210/pdb8yds/pdb
• Descriptor: SARS-CoV-2 inhibiting peptide Ce59, Spike protein S1, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... (5 entities in total)
• Functional Keywords: rbd, viral protein-inhibitor complex, viral protein/inhibitor
• Biological source: Severe acute respiratory syndrome coronavirus 2; More
• Total number of polymer chains: 2
• Total formula weight: 31700.26

Authors

Nakamura, S.,Numoto, N.,Fujiyoshi, Y. (deposition date: 2024-02-21, release date: 2025-01-15)

• Primary citation: Nakamura, S.,Tanimura, Y.,Nomura, R.,Suzuki, H.,Nishikawa, K.,Kamegawa, A.,Numoto, N.,Tanaka, A.,Kawabata, S.,Sakaguchi, S.,Emi, A.,Suzuki, Y.,Fujiyoshi, Y.; Development of a short-peptide inhibiting any SARS-CoV-2 variants based on structural biology; To Be Published,

Experimental method

X-RAY DIFFRACTION (1.9 Å)