8XEG

Cryo-EM structure of Adeno-associated Virus 9P31 in 1.76 angstrom.

This is a non-PDB format compatible entry.

Summary for 8XEG

• Entry DOI: 10.2210/pdb8xeg/pdb
• EMDB information: 38289
• Descriptor: Capsid protein VP1 (1 entity in total)
• Functional Keywords: aav9p31, virus, dependo parvovirus
• Biological source: Adeno-associated virus 9
• Total number of polymer chains: 1
• Total formula weight: 59295.28

Authors

Zhang, R.,Liu, Y.,Lou, Z. (deposition date: 2023-12-12, release date: 2024-01-24, Last modification date: 2025-07-02)

Primary citation

Zhang, R.,Liu, Y.,Yu, F.,Xu, G.,Li, L.,Li, B.,Lou, Z.
Structural basis of the recognition of adeno-associated virus by the neurological system-related receptor carbonic anhydrase IV.
Plos Pathog., 20:e1011953-e1011953, 2024

PubMed Abstract: Carbonic anhydrase IV (Car4) is a newly identified receptor that allows adeno-associated virus (AAV) 9P31 to cross the blood-brain barrier and achieve efficient infection in the central nervous system (CNS) in mouse models. However, the molecular mechanism by which engineered AAV capsids with 7-mer insertion in the variable region (VR) VIII recognize these novel cellular receptors is unknown. Here we report the cryo-EM structures of AAV9P31 and its complex with Mus musculus Car4 at atomic resolution by utilizing the block-based reconstruction (BBR) method. The structures demonstrated that Car4 binds to the protrusions at 3-fold axes of the capsid. The inserted 7-mer extends into a hydrophobic region near the catalytic center of Car4 to form stable interactions. Mutagenesis studies also identified the key residues in Car4 responsible for the AAV9P31 interaction. These findings provide new insights into the novel receptor recognition mechanism of AAV generated by directed evolution and highlight the application of the BBR method to studying the virus-receptor molecular mechanism.

PubMed: 38315719
DOI: 10.1371/journal.ppat.1011953

Experimental method

ELECTRON MICROSCOPY (1.76 Å)