8VZC

Crystal Structure of 2-Hydroxyacyl-CoA Lyase/Synthse ApbHACS from Alphaproteobacteria bacterium in the Complex with THDP, Formyl-CoA, and ADP

This is a non-PDB format compatible entry.

Summary for 8VZC

• Entry DOI: 10.2210/pdb8vzc/pdb
• Descriptor: Oxalyl-CoA decarboxylase, 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-(hydroxymethyl)-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium, S-{(9R,13S,15R)-17-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-9,13,15-TRIHYDROXY-10,10-DIMETHYL-13,15-DIOXIDO-4,8-DIOXO-12,14,16-TRIOXA-3,7-DIAZA-13,15-DIPHOSPHAHEPTADEC-1-YL} THIOFORMATE, ... (9 entities in total)
• Functional Keywords: 2-hydroxyacyl-coa lyase/synthase, acyloin condensation, oxalyl-coa decarboxylase, sbc, eberlight, lyase
• Biological source: Alphaproteobacteria bacterium
• Total number of polymer chains: 4
• Total formula weight: 246091.27

Authors

Gade, P.,Kim, Y.,Endres, M.,Lee, S.,Yoshikuni, Y.,Gonzalez, R.,Michalska, K.,Joachimiak, A. (deposition date: 2024-02-11, release date: 2024-10-02)

• Primary citation: Kim, Y.,Lee, S.H.,Gade, P.,Nattermann, M.,Maltseva, N.,Endres, M.,Chen, J.,Wichmann, P.,Hu, Y.,Marchal, D.G.,Yoshikuni, Y.,Erb, T.J.,Gonzalez, R.,Michalska, K.,Joachimiak, A.; Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family.; Commun Chem, 7:160-160, 2024; PubMed: 39034323; DOI: 10.1038/s42004-024-01242-y

Experimental method

X-RAY DIFFRACTION (1.72 Å)