8S1U

YlmH bound to stalled 50S subunits with RqcH and PtRNA

8S1U の概要

• エントリーDOI: 10.2210/pdb8s1u/pdb
• 関連するPDBエントリー: 8S1P
• EMDBエントリー: 19638 19641
• 分子名称: P-tRNA, 50S ribosomal protein L3, 50S ribosomal protein L4, ... (33 entities in total)
• 機能のキーワード: lsu, 50s, rqc, ylmh, ribosome, rqch
• 由来する生物種: Bacillus subtilis subsp. subtilis str. 168; 詳細
• タンパク質・核酸の鎖数: 33
• 化学式量合計: 1476704.74

構造登録者

Paternoga, H.,Wilson, D.N. (登録日: 2024-02-16, 公開日: 2024-06-12, 最終更新日: 2025-03-12)

主引用文献

Takada, H.,Paternoga, H.,Fujiwara, K.,Nakamoto, J.A.,Park, E.N.,Dimitrova-Paternoga, L.,Beckert, B.,Saarma, M.,Tenson, T.,Buskirk, A.R.,Atkinson, G.C.,Chiba, S.,Wilson, D.N.,Hauryliuk, V.
A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis.
Nucleic Acids Res., 52:8483-8499, 2024

PubMed Abstract: Ribosomes trapped on mRNAs during protein synthesis need to be rescued for the cell to survive. The most ubiquitous bacterial ribosome rescue pathway is trans-translation mediated by tmRNA and SmpB. Genetic inactivation of trans-translation can be lethal, unless ribosomes are rescued by ArfA or ArfB alternative rescue factors or the ribosome-associated quality control (RQC) system, which in Bacillus subtilis involves MutS2, RqcH, RqcP and Pth. Using transposon sequencing in a trans-translation-incompetent B. subtilis strain we identify a poorly characterized S4-domain-containing protein YlmH as a novel potential RQC factor. Cryo-EM structures reveal that YlmH binds peptidyl-tRNA-50S complexes in a position analogous to that of S4-domain-containing protein RqcP, and that, similarly to RqcP, YlmH can co-habit with RqcH. Consistently, we show that YlmH can assume the role of RqcP in RQC by facilitating the addition of poly-alanine tails to truncated nascent polypeptides. While in B. subtilis the function of YlmH is redundant with RqcP, our taxonomic analysis reveals that in multiple bacterial phyla RqcP is absent, while YlmH and RqcH are present, suggesting that in these species YlmH plays a central role in the RQC.

PubMed: 38811035
DOI: 10.1093/nar/gkae399

実験手法

ELECTRON MICROSCOPY (3.4 Å)