8RIN
Crystal structure of EccC5 DUF domain of Mycobacterium tuberculosis
Summary for 8RIN
| Entry DOI | 10.2210/pdb8rin/pdb |
| Descriptor | ESX-5 secretion system protein EccC5 (2 entities in total) |
| Functional Keywords | type vii secretion systems, duf, esx5, unknown function |
| Biological source | Mycobacterium tuberculosis H37Rv More |
| Total number of polymer chains | 2 |
| Total formula weight | 65361.55 |
| Authors | |
| Primary citation | Ceballos-Zuniga, F.,Menendez, M.,Perez-Dorado, I. New insights into the domain of unknown function (DUF) of EccC 5 , the pivotal ATPase providing the secretion driving force to the ESX-5 secretion system. Acta Crystallogr D Struct Biol, 80:397-409, 2024 Cited by PubMed Abstract: Type VII secretion (T7S) systems, also referred to as ESAT-6 secretion (ESX) systems, are molecular machines that have gained great attention due to their implications in cell homeostasis and in host-pathogen interactions in mycobacteria. The latter include important human pathogens such as Mycobacterium tuberculosis (Mtb), the etiological cause of human tuberculosis, which constitutes a pandemic accounting for more than one million deaths every year. The ESX-5 system is exclusively found in slow-growing pathogenic mycobacteria, where it mediates the secretion of a large family of virulence factors: the PE and PPE proteins. The secretion driving force is provided by EccC, a multidomain ATPase that operates using four globular cytosolic domains: an N-terminal domain of unknown function (EccC) and three FtsK/SpoIIIE ATPase domains. Recent structural and functional studies of ESX-3 and ESX-5 systems have revealed EccC to be an ATPase-like fold domain with potential ATPase activity, the functionality of which is essential for secretion. Here, the crystal structure of the MtbEccC domain is reported at 2.05 Å resolution, which reveals a nucleotide-free structure with degenerated cis-acting and trans-acting elements involved in ATP binding and hydrolysis. This crystallographic study, together with a biophysical assessment of the interaction of MtbEccC with ATP/Mg, supports the absence of ATPase activity proposed for this domain. It is shown that this degeneration is also present in DUF domains from other ESX and ESX-like systems, which are likely to exhibit poor or null ATPase activity. Moreover, based on an in silico model of the N-terminal region of MtbEccC, it is hypothesized that MtbEccC is a degenerated ATPase domain that may have retained the ability to hexamerize. These observations draw attention to DUF domains as structural elements with potential implications in the opening and closure of the membrane pore during the secretion process via their involvement in inter-protomer interactions. PubMed: 38805245DOI: 10.1107/S2059798324004248 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.05 Å) |
Structure validation
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