7ZEI

Thermostable GH159 glycoside hydrolase from Caldicellulosiruptor at 1.7 A

Summary for 7ZEI

• Entry DOI: 10.2210/pdb7zei/pdb
• Related: 5GLR
• Descriptor: Ch_Gaf159A, MAGNESIUM ION, CALCIUM ION, ... (7 entities in total)
• Functional Keywords: beta propeller, galactofuranose, arabinofuranosidase, catalysis, exo-hydrolase, hydrolase
• Biological source: Caldicellulosiruptor hydrothermalis
• Total number of polymer chains: 6
• Total formula weight: 228263.63

Authors

Baudrexl, M.,Fida, T.,Berk, B.,Schwarz, W.,Zverlov, V.V.,Groll, M.,Liebl, W. (deposition date: 2022-03-31, release date: 2022-08-03, Last modification date: 2024-05-01)

Primary citation

Baudrexl, M.,Fida, T.,Berk, B.,Schwarz, W.H.,Zverlov, V.V.,Groll, M.,Liebl, W.
Biochemical and Structural Characterization of Thermostable GH159 Glycoside Hydrolases Exhibiting alpha-L-Arabinofuranosidase Activity.
Front Mol Biosci, 9:907439-907439, 2022

PubMed Abstract: Functional, biochemical, and preliminary structural properties are reported for three glycoside hydrolases of the recently described glycoside hydrolase (GH) family 159. The genes were cloned from the genomic sequences of different strains. This study extends the spectrum of functions of GH159 enzymes. The only activity previously reported for GH159 was hydrolytic activity on β-galactofuranosides. Activity screening using a set of -nitrophenyl (NP) glycosides suggested additional arabinosidase activity on substrates with arabinosyl residues, which has not been previously reported for members of GH159. Even though the thermophilic enzymes investigated-Gaf159A, Gaf159A, and _Gaf159A-cleaved NP-α-l-arabinofuranoside, they were only weakly active on arabinogalactan, and they did not cleave arabinose from arabinan, arabinoxylan, or gum arabic. However, the enzymes were able to hydrolyze the α-1,3-linkage in different arabinoxylan-derived oligosaccharides (AXOS) with arabinosylated xylose at the non-reducing end (AX, AXX), suggesting their role in the intracellular hydrolysis of oligosaccharides. Crystallization and structural analysis of the apo form of one of the enzymes, _Gaf159A, enabled the elucidation of the first 3D structure of a GH159 member. This work revealed a five-bladed β-propeller structure for GH159 enzymes. The 3D structure and its substrate-binding pocket also provides an explanation at the molecular level for the observed exo-activity of the enzyme. Furthermore, the structural data enabled the prediction of the catalytic amino acids. This was supported by the complete inactivation by mutation of residues D19, D142, and E190 of _Gaf159A.

PubMed: 35847984
DOI: 10.3389/fmolb.2022.907439

Experimental method

X-RAY DIFFRACTION (1.7 Å)