7WUR

CryoEM structure of sNS1 complexed with Fab5E3

Summary for 7WUR

• Entry DOI: 10.2210/pdb7wur/pdb
• EMDB information: 32839
• Descriptor: Core protein, Fab 5E3 Heavy Chain, Fab 5E3 Light Chain (3 entities in total)
• Functional Keywords: ns1, complex, viral protein, viral protein-immune system complex, viral protein/immune system
• Biological source: Dengue virus 2; More
• Total number of polymer chains: 6
• Total formula weight: 127028.82

Authors

Shu, B.,Lok, S.M. (deposition date: 2022-02-09, release date: 2022-12-21, Last modification date: 2024-10-30)

Primary citation

Shu, B.,Ooi, J.S.G.,Tan, A.W.K.,Ng, T.S.,Dejnirattisai, W.,Mongkolsapaya, J.,Fibriansah, G.,Shi, J.,Kostyuchenko, V.A.,Screaton, G.R.,Lok, S.M.
CryoEM structures of the multimeric secreted NS1, a major factor for dengue hemorrhagic fever.
Nat Commun, 13:6756-6756, 2022

PubMed Abstract: Dengue virus infection can cause dengue hemorrhagic fever (DHF). Dengue NS1 is multifunctional. The intracellular dimeric NS1 (iNS1) forms part of the viral replication complex. Previous studies suggest the extracellular secreted NS1 (sNS1), which is a major factor contributing to DHF, exists as hexamers. The structure of the iNS1 is well-characterised but not that of sNS1. Here we show by cryoEM that the recombinant sNS1 exists in multiple oligomeric states: the tetrameric (stable and loose conformation) and hexameric structures. Stability of the stable and loose tetramers is determined by the conformation of their N-terminal domain - elongated β-sheet or β-roll. Binding of an anti-NS1 Fab breaks the loose tetrameric and hexameric sNS1 into dimers, whereas the stable tetramer remains largely unbound. Our results show detailed quaternary organization of different oligomeric states of sNS1 and will contribute towards the design of dengue therapeutics.

PubMed: 36347841
DOI: 10.1038/s41467-022-34415-1

Experimental method

ELECTRON MICROSCOPY (3.5 Å)