7TQQ

Structure of human TREX1-DNA complex

Summary for 7TQQ

• Entry DOI: 10.2210/pdb7tqq/pdb
• Descriptor: Three-prime repair exonuclease 1, DNA (5'-D(P*TP*TP*GP*GP*CP*CP*GP*GP*CP*CP*AP*TP*C)-3') (3 entities in total)
• Functional Keywords: nuclease, dnase, innate immunity, autoimmunity, hydrolase, hydrolase-dna complex, hydrolase/dna
• Biological source: Homo sapiens (human); More
• Total number of polymer chains: 8
• Total formula weight: 131113.20

Authors

Zhou, W.,Richmond-Buccola, D.,Kranzusch, P.J. (deposition date: 2022-01-26, release date: 2022-08-03, Last modification date: 2023-10-18)

Primary citation

Zhou, W.,Richmond-Buccola, D.,Wang, Q.,Kranzusch, P.J.
Structural basis of human TREX1 DNA degradation and autoimmune disease.
Nat Commun, 13:4277-4277, 2022

PubMed Abstract: TREX1 is a cytosolic DNA nuclease essential for regulation of cGAS-STING immune signaling. Existing structures of mouse TREX1 establish a mechanism of DNA degradation and provide a key model to explain autoimmune disease, but these structures incompletely explain human disease-associated mutations and have limited ability to guide development of small-molecule therapeutics. Here we determine crystal structures of human TREX1 in apo and DNA-bound conformations that provide high-resolution detail of all human-specific features. A 1.25 Å structure of human TREX1 establishes a complete model of solvation of the exonuclease active site and a 2.2 Å structure of the human TREX1-DNA complex enables identification of specific substitutions involved in DNA recognition. We map each TREX1 mutation associated with autoimmune disease and establish distinct categories of substitutions predicted to impact enzymatic function, protein stability, and interaction with cGAS-DNA liquid droplets. Our results explain how human-specific substitutions regulate TREX1 function and provide a foundation for structure-guided design of TREX1 therapeutics.

PubMed: 35879334
DOI: 10.1038/s41467-022-32055-z

Experimental method

X-RAY DIFFRACTION (2.2 Å)