7TIN

The Structure of S. aureus MenD

Summary for 7TIN

• Entry DOI: 10.2210/pdb7tin/pdb
• Descriptor: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase, THIAMINE DIPHOSPHATE, GLYCINE, ... (7 entities in total)
• Functional Keywords: menaquinone biosynthesis, mend, sephchc synthase, transferase
• Biological source: Staphylococcus aureus
• Total number of polymer chains: 4
• Total formula weight: 255674.59

Authors

Johnston, J.M.,Stanborough, T.,Ho, N.A.T.,Akazong, E.W.,Jiao, W. (deposition date: 2022-01-14, release date: 2022-09-14, Last modification date: 2023-10-25)

Primary citation

Stanborough, T.,Ho, N.A.T.,Bulloch, E.M.M.,Bashiri, G.,Dawes, S.S.,Akazong, E.W.,Titterington, J.,Allison, T.M.,Jiao, W.,Johnston, J.M.
Allosteric inhibition of Staphylococcus aureus MenD by 1,4-dihydroxy naphthoic acid: a feedback inhibition mechanism of the menaquinone biosynthesis pathway.
Philos.Trans.R.Soc.Lond.B Biol.Sci., 378:20220035-20220035, 2023

PubMed Abstract: Menaquinones (MKs) are electron carriers in bacterial respiratory chains. In (), MKs are essential for aerobic and anaerobic respiration. As MKs are redox-active, their biosynthesis likely requires tight regulation to prevent disruption of cellular redox balance. We recently found that the MenD, the first committed enzyme of the MK biosynthesis pathway, is allosterically inhibited by the downstream metabolite 1,4-dihydroxy-2-naphthoic acid (DHNA). To understand if this is a conserved mechanism in phylogenetically distant genera that also use MK, we investigated whether the MenD is allosterically inhibited by DHNA. Our results show that DHNA binds to and inhibits the SEPHCHC synthase activity of -MenD enzymes. We identified residues in the DHNA binding pocket that are important for catalysis (Arg98, Lys283, Lys309) and inhibition (Arg98, Lys283). Furthermore, we showed that exogenous DHNA inhibits the growth of , an effect that can be rescued by supplementing the growth medium with MK-4. Our results demonstrate that, despite a lack of strict conservation of the DHNA binding pocket between -MenD and -MenD, feedback inhibition by DHNA is a conserved mechanism in -MenD and hence the MK biosynthesis pathway. These findings may have implications for the development of anti-staphylococcal agents targeting MK biosynthesis. This article is part of the theme issue 'Reactivity and mechanism in chemical and synthetic biology'.

PubMed: 36633276
DOI: 10.1098/rstb.2022.0035

Experimental method

X-RAY DIFFRACTION (2.35 Å)