7THT

CryoEM structure of SARS-CoV-2 S protein in complex with Receptor Binding Domain antibody DH1042

7THT の概要

• エントリーDOI: 10.2210/pdb7tht/pdb
• 関連するPDBエントリー: 7THE
• EMDBエントリー: 25904
• 分子名称: Spike glycoprotein, DH1042 heavy chain, DH1042 light chain, ... (6 entities in total)
• 機能のキーワード: rbd antibody, dh1042, sars, covid-19, sars-cov-2 2p s ectodomain, viral protein, immune system, viral protein-immune system complex, viral protein/immune system
• 由来する生物種: Severe acute respiratory syndrome coronavirus 2; 詳細
• タンパク質・核酸の鎖数: 9
• 化学式量合計: 460079.02

構造登録者

Manne, K.,May, A.,Acharya, P. (登録日: 2022-01-12, 公開日: 2022-02-16, 最終更新日: 2024-10-30)

主引用文献

Gobeil, S.M.,Henderson, R.,Stalls, V.,Janowska, K.,Huang, X.,May, A.,Speakman, M.,Beaudoin, E.,Manne, K.,Li, D.,Parks, R.,Barr, M.,Deyton, M.,Martin, M.,Mansouri, K.,Edwards, R.J.,Eaton, A.,Montefiori, D.C.,Sempowski, G.D.,Saunders, K.O.,Wiehe, K.,Williams, W.,Korber, B.,Haynes, B.F.,Acharya, P.
Structural diversity of the SARS-CoV-2 Omicron spike.
Mol.Cell, 82:2050-2068.e6, 2022

PubMed Abstract: Aided by extensive spike protein mutation, the SARS-CoV-2 Omicron variant overtook the previously dominant Delta variant. Spike conformation plays an essential role in SARS-CoV-2 evolution via changes in receptor-binding domain (RBD) and neutralizing antibody epitope presentation, affecting virus transmissibility and immune evasion. Here, we determine cryo-EM structures of the Omicron and Delta spikes to understand the conformational impacts of mutations in each. The Omicron spike structure revealed an unusually tightly packed RBD organization with long range impacts that were not observed in the Delta spike. Binding and crystallography revealed increased flexibility at the functionally critical fusion peptide site in the Omicron spike. These results reveal a highly evolved Omicron spike architecture with possible impacts on its high levels of immune evasion and transmissibility.

PubMed: 35447081
DOI: 10.1016/j.molcel.2022.03.028

実験手法

ELECTRON MICROSCOPY (3.42 Å)