7M7B

SARS-CoV-2 Spike:Fab 3D11 complex focused refinement

Summary for 7M7B

• Entry DOI: 10.2210/pdb7m7b/pdb
• Related: 7KQE
• EMDB information: 22993 22994 22995 23709
• Descriptor: Spike glycoprotein, Antibody Fab 3D11 heavy chain, Antibody Fab 3D11 light chain, ... (4 entities in total)
• Functional Keywords: sars-cov-2, spike, antibody, fab, viral protein-immune system complex, viral protein
• Biological source: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV); More
• Total number of polymer chains: 3
• Total formula weight: 206361.14

Authors

Asarnow, D.,Cheng, Y. (deposition date: 2021-03-27, release date: 2021-05-26, Last modification date: 2024-10-23)

Primary citation

Asarnow, D.,Wang, B.,Lee, W.H.,Hu, Y.,Huang, C.W.,Faust, B.,Ng, P.M.L.,Ngoh, E.Z.X.,Bohn, M.,Bulkley, D.,Pizzorno, A.,Ary, B.,Tan, H.C.,Lee, C.Y.,Minhat, R.A.,Terrier, O.,Soh, M.K.,Teo, F.J.,Yeap, Y.Y.C.,Seah, S.G.K.,Chan, C.E.Z.,Connelly, E.,Young, N.J.,Maurer-Stroh, S.,Renia, L.,Hanson, B.J.,Rosa-Calatrava, M.,Manglik, A.,Cheng, Y.,Craik, C.S.,Wang, C.I.
Structural insight into SARS-CoV-2 neutralizing antibodies and modulation of syncytia.
Cell, 184:3192-, 2021

PubMed Abstract: Infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is initiated by binding of the viral Spike protein to host receptor angiotensin-converting enzyme 2 (ACE2), followed by fusion of viral and host membranes. Although antibodies that block this interaction are in emergency use as early coronavirus disease 2019 (COVID-19) therapies, the precise determinants of neutralization potency remain unknown. We discovered a series of antibodies that potently block ACE2 binding but exhibit divergent neutralization efficacy against the live virus. Strikingly, these neutralizing antibodies can inhibit or enhance Spike-mediated membrane fusion and formation of syncytia, which are associated with chronic tissue damage in individuals with COVID-19. As revealed by cryoelectron microscopy, multiple structures of Spike-antibody complexes have distinct binding modes that not only block ACE2 binding but also alter the Spike protein conformational cycle triggered by ACE2 binding. We show that stabilization of different Spike conformations leads to modulation of Spike-mediated membrane fusion with profound implications for COVID-19 pathology and immunity.

PubMed: 33974910
DOI: 10.1016/j.cell.2021.04.033

Experimental method

ELECTRON MICROSCOPY (2.95 Å)