7BXO

Crystal structure of the toxin-antitoxin with AMP-PNP

Summary for 7BXO

• Entry DOI: 10.2210/pdb7bxo/pdb
• Descriptor: Toxin-antitoxin system antidote Mnt family, Toxin-antitoxin system toxin HepN family, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... (5 entities in total)
• Functional Keywords: a novel toxin-antitoxin system, toxin
• Biological source: Shewanella oneidensis (strain MR-1); More
• Total number of polymer chains: 8
• Total formula weight: 123705.47

Authors

Ouyang, S.Y.,Zhen, X.K. (deposition date: 2020-04-20, release date: 2020-09-30, Last modification date: 2023-11-29)

Primary citation

Yao, J.,Zhen, X.,Tang, K.,Liu, T.,Xu, X.,Chen, Z.,Guo, Y.,Liu, X.,Wood, T.K.,Ouyang, S.,Wang, X.
Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48:11054-11067, 2020

PubMed Abstract: The two-gene module HEPN/MNT is predicted to be the most abundant toxin/antitoxin (TA) system in prokaryotes. However, its physiological function and neutralization mechanism remains obscure. Here, we discovered that the MntA antitoxin (MNT-domain protein) acts as an adenylyltransferase and chemically modifies the HepT toxin (HEPN-domain protein) to block its toxicity as an RNase. Biochemical and structural studies revealed that MntA mediates the transfer of three AMPs to a tyrosine residue next to the RNase domain of HepT in Shewanella oneidensis. Furthermore, in vitro enzymatic assays showed that the three AMPs are transferred to HepT by MntA consecutively with ATP serving as the substrate, and this polyadenylylation is crucial for reducing HepT toxicity. Additionally, the GSX10DXD motif, which is conserved among MntA proteins, is the key active motif for polyadenylylating and neutralizing HepT. Thus, HepT/MntA represents a new type of TA system, and the polyadenylylation-dependent TA neutralization mechanism is prevalent in bacteria and archaea.

PubMed: 33045733
DOI: 10.1093/nar/gkaa855

Experimental method

X-RAY DIFFRACTION (2.77 Å)