6VJB

Crystal structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes

6VJB の概要

• エントリーDOI: 10.2210/pdb6vjb/pdb
• 分子名称: Putative cell envelope proteinase, 1,2-ETHANEDIOL, CALCIUM ION, ... (4 entities in total)
• 機能のキーワード: vaccine, serine-protease, group a streptococcus, immune system
• 由来する生物種: Streptococcus pyogenes
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 175602.04

構造登録者

Malito, E.,Rouse, S. (登録日: 2020-01-15, 公開日: 2020-04-15, 最終更新日: 2023-10-11)

主引用文献

McKenna, S.,Malito, E.,Rouse, S.L.,Abate, F.,Bensi, G.,Chiarot, E.,Micoli, F.,Mancini, F.,Gomes Moriel, D.,Grandi, G.,Mossakowska, D.,Pearson, M.,Xu, Y.,Pease, J.,Sriskandan, S.,Margarit, I.,Bottomley, M.J.,Matthews, S.
Structure, dynamics and immunogenicity of a catalytically inactive CXC chemokine-degrading protease SpyCEP from Streptococcus pyogenes.
Comput Struct Biotechnol J, 18:650-660, 2020

PubMed Abstract: Over 18 million disease cases and half a million deaths worldwide are estimated to be caused annually by Group A Streptococcus. A vaccine to prevent GAS disease is urgently needed. SpyCEP (Streptococcus Cell-Envelope Proteinase) is a surface-exposed serine protease that inactivates chemokines, impairing neutrophil recruitment and bacterial clearance, and has shown promising immunogenicity in preclinical models. Although SpyCEP structure has been partially characterized, a more complete and higher resolution understanding of its antigenic features would be desirable prior to large scale manufacturing. To address these gaps and facilitate development of this globally important vaccine, we performed immunogenicity studies with a safety-engineered SpyCEP mutant, and comprehensively characterized its structure by combining X-ray crystallography, NMR spectroscopy and molecular dynamics simulations. We found that the catalytically-inactive SpyCEP antigen conferred protection similar to wild-type SpyCEP in a mouse infection model. Further, a new higher-resolution crystal structure of the inactive SpyCEP mutant provided new insights into this large chemokine protease comprising nine domains derived from two non-covalently linked fragments. NMR spectroscopy and molecular simulation analyses revealed conformational flexibility that is likely important for optimal substrate recognition and overall function. These combined immunogenicity and structural data demonstrate that the full-length SpyCEP inactive mutant is a strong candidate human vaccine antigen. These findings show how a multi-disciplinary study was used to overcome obstacles in the development of a GAS vaccine, an approach applicable to other future vaccine programs. Moreover, the information provided may also facilitate the structure-based discovery of small-molecule therapeutics targeting SpyCEP protease inhibition.

PubMed: 32257048
DOI: 10.1016/j.csbj.2020.03.004

実験手法

X-RAY DIFFRACTION (2.24 Å)