Human Cyclophilin D in complex with N-cyclopentyl-N'-pyridin-2-ylmethyl-oxalamide

Summary for 6R9X

DescriptorPeptidyl-prolyl cis-trans isomerase F, mitochondrial, ~{N}'-cyclopentyl-~{N}-(pyridin-2-ylmethyl)ethanediamide (3 entities in total)
Functional Keywordscyclophilin, beta barrel, prolyl cis/trans isomerase, mitoc, isomerase
Biological sourceHomo sapiens (Human)
Total number of polymer chains1
Total molecular weight17899.42
Graedler, U. (deposition date: 2019-04-04, release date: 2019-11-27)
Primary citation
Gradler, U.,Schwarz, D.,Blaesse, M.,Leuthner, B.,Johnson, T.L.,Bernard, F.,Jiang, X.,Marx, A.,Gilardone, M.,Lemoine, H.,Roche, D.,Jorand-Lebrun, C.
Discovery of novel Cyclophilin D inhibitors starting from three dimensional fragments with millimolar potencies.
Bioorg.Med.Chem.Lett., 29:126717-126717, 2019
PubMed: 31635932 (PDB entries with the same primary citation)
DOI: 10.1016/j.bmcl.2019.126717
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.19600 1.5%0MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
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