6R1B

Crystal structure of UgpB from Mycobacterium tuberculosis in complex with glycerophosphocholine

Summary for 6R1B

• Entry DOI: 10.2210/pdb6r1b/pdb
• Related: 4MFI
• Descriptor: Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB, 2-(((R)-2,3-DIHYDROXYPROPYL)PHOSPHORYLOXY)-N,N,N-TRIMETHYLETHANAMINIUM, MAGNESIUM ION, ... (8 entities in total)
• Functional Keywords: mycobacterium tuberculosis ugpb substrate-binding protein glycerophosphocholine, transport protein
• Biological source: Mycobacterium tuberculosis; More
• Total number of polymer chains: 4
• Total formula weight: 170231.25

Authors

Fenn, J.,Nepravishta, R.,Guy, C.S.,Harrison, J.,Angulo, J.,Cameron, A.D.,Fullam, E. (deposition date: 2019-03-14, release date: 2019-09-04, Last modification date: 2024-01-24)

Primary citation

Fenn, J.S.,Nepravishta, R.,Guy, C.S.,Harrison, J.,Angulo, J.,Cameron, A.D.,Fullam, E.
Structural Basis of Glycerophosphodiester Recognition by theMycobacterium tuberculosisSubstrate-Binding Protein UgpB.
Acs Chem.Biol., 14:1879-1887, 2019

PubMed Abstract: () is the causative agent of tuberculosis (TB) and has evolved an incredible ability to survive latently within the human host for decades. The pathogen encodes for a low number of ATP-binding cassette (ABC) importers for the acquisition of carbohydrates that may reflect the nutrient poor environment within the host macrophages. UgpB (Rv2833c) is the substrate binding domain of the UgpABCE transporter that recognizes glycerophosphocholine (GPC), indicating that this transporter has a role in recycling glycerophospholipid metabolites. By using a combination of saturation transfer difference (STD) NMR and X-ray crystallography, we report the structural analysis of UgpB complexed with GPC and have identified that UgpB not only recognizes GPC but is also promiscuous for a broad range of glycerophosphodiesters. Complementary biochemical analyses and site-directed mutagenesis precisely define the molecular basis and specificity of glycerophosphodiester recognition. Our results provide critical insights into the structural and functional role of the UgpB transporter and reveal that the specificity of this ABC-transporter is not limited to GPC, therefore optimizing the ability of to scavenge scarce nutrients and essential glycerophospholipid metabolites via a single transporter during intracellular infection.

PubMed: 31433162
DOI: 10.1021/acschembio.9b00204

Experimental method

X-RAY DIFFRACTION (2.27000203237 Å)