Crystal structure of RavD (residues 1-200) from Legionella pneumophila (strain Corby) complexed with Met-1 linked di-ubiquitin

Summary for 6NJD

DescriptorDi-ubiquitin, RavD, MAGNESIUM ION, ... (4 entities in total)
Functional Keywordsdeubiquitinase, bacterial effector, hydrolase
Biological sourceHomo sapiens (Human)
Total number of polymer chains4
Total molecular weight81141.11
Wang, X.,Zhou, Y.,Zhu, Y. (deposition date: 2019-01-03, release date: 2019-05-22, Last modification date: 2019-08-07)
Primary citation
Wan, M.,Wang, X.,Huang, C.,Xu, D.,Wang, Z.,Zhou, Y.,Zhu, Y.
A bacterial effector deubiquitinase specifically hydrolyses linear ubiquitin chains to inhibit host inflammatory signalling.
Nat Microbiol, 4:1282-1293, 2019
PubMed: 31110362 (PDB entries with the same primary citation)
DOI: 10.1038/s41564-019-0454-1
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.25230 1.4% 6.9%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution