6NDJ

Crystal structure of human NLRP6 PYD domain with MBP fusion

6NDJ の概要

• エントリーDOI: 10.2210/pdb6ndj/pdb
• 分子名称: Maltose/maltodextrin-binding periplasmic protein, NACHT, LRR and PYD domains-containing protein 6 chimera (2 entities in total)
• 機能のキーワード: death domain fold, inflammasome, signaling protein
• 由来する生物種: Escherichia coli; 詳細
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 104738.57

構造登録者

Shen, C.,Fu, T.M.,Wu, H. (登録日: 2018-12-13, 公開日: 2019-01-23, 最終更新日: 2024-03-13)

主引用文献

Shen, C.,Lu, A.,Xie, W.J.,Ruan, J.,Negro, R.,Egelman, E.H.,Fu, T.M.,Wu, H.
Molecular mechanism for NLRP6 inflammasome assembly and activation.
Proc. Natl. Acad. Sci. U.S.A., 116:2052-2057, 2019

PubMed Abstract: Inflammasomes are large protein complexes that trigger host defense in cells by activating inflammatory caspases for cytokine maturation and pyroptosis. NLRP6 is a sensor protein in the nucleotide-binding domain (NBD) and leucine-rich repeat (LRR)-containing (NLR) inflammasome family that has been shown to play multiple roles in regulating inflammation and host defenses. Despite the significance of the NLRP6 inflammasome, little is known about the molecular mechanism behind its assembly and activation. Here we present cryo-EM and crystal structures of NLRP6 pyrin domain (PYD). We show that NLRP6 PYD alone is able to self-assemble into filamentous structures accompanied by large conformational changes and can recruit the ASC adaptor using PYD-PYD interactions. Using molecular dynamics simulations, we identify the surface that the NLRP6 PYD filament uses to recruit ASC PYD. We further find that full-length NLRP6 assembles in a concentration-dependent manner into wider filaments with a PYD core surrounded by the NBD and the LRR domain. These findings provide a structural understanding of inflammasome assembly by NLRP6 and other members of the NLR family.

PubMed: 30674671
DOI: 10.1073/pnas.1817221116

実験手法

X-RAY DIFFRACTION (2.27 Å)