6NCL

Near-atomic structure of icosahedrally averaged PBCV-1 capsid

This is a large structure.

Summary for 6NCL

EMDB information0436
DescriptorP14, P9, P10, ... (15 entities in total)
Functional Keywordstape-measure protein, minor capsid proteins, zip protein, giant virus, virus
Biological sourceParamecium bursaria Chlorella virus 1 (PBCV-1)
Total number of polymer chains115
Total molecular weight4793078.58
Authors
Fang, Q.,Rossmann, M.G. (deposition date: 2018-12-11, release date: 2019-01-30, Last modification date: 2019-02-06)
Primary citation
Fang, Q.,Zhu, D.,Agarkova, I.,Adhikari, J.,Klose, T.,Liu, Y.,Chen, Z.,Sun, Y.,Gross, M.L.,Van Etten, J.L.,Zhang, X.,Rossmann, M.G.
Near-atomic structure of a giant virus.
Nat Commun, 10:388-388, 2019
PubMed: 30674888 (PDB entries with the same primary citation)
DOI: 10.1038/s41467-019-08319-6
MImport into Mendeley
Experimental method
ELECTRON MICROSCOPY
?

Structure validation

ClashscoreRamachandran outliersSidechain outliers10 0.2% 0.3%MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures

More Asymmetric unit images

Molmil generated image of 6ncl
no rotation
Molmil generated image of 6ncl
rotated about x axis by 90°
Molmil generated image of 6ncl
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 6ncl
no rotation
Molmil generated image of 6ncl
rotated about x axis by 90°
Molmil generated image of 6ncl
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (6ncl-assembly1.cif.gz [404.7 MB])
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