6MXZ

Structure of 53BP1 Tudor domains in complex with small molecule UNC3474

6MXZ の概要

• エントリーDOI: 10.2210/pdb6mxz/pdb
• 分子名称: TP53-binding protein 1, N-[3-(tert-butylamino)propyl]-3-(propan-2-yl)benzamide, FORMIC ACID, ... (4 entities in total)
• 機能のキーワード: dna damage response, tudor domain, 53bp1, small molecule inhibitor, protein binding
• 由来する生物種: Homo sapiens (Human)
• タンパク質・核酸の鎖数: 10
• 化学式量合計: 141152.06

構造登録者

Cui, G.,Botuyan, M.V.,Schuller, D.J.,Mer, G. (登録日: 2018-10-31, 公開日: 2019-11-27, 最終更新日: 2023-10-11)

主引用文献

Cui, G.,Botuyan, M.V.,Drane, P.,Hu, Q.,Bragantini, B.,Thompson, J.R.,Schuller, D.J.,Detappe, A.,Perfetti, M.T.,James, L.I.,Frye, S.V.,Chowdhury, D.,Mer, G.
An autoinhibited state of 53BP1 revealed by small molecule antagonists and protein engineering.
Nat Commun, 14:6091-6091, 2023

PubMed Abstract: The recruitment of 53BP1 to chromatin, mediated by its recognition of histone H4 dimethylated at lysine 20 (H4K20me2), is important for DNA double-strand break repair. Using a series of small molecule antagonists, we demonstrate a conformational equilibrium between an open and a pre-existing lowly populated closed state of 53BP1 in which the H4K20me2 binding surface is buried at the interface between two interacting 53BP1 molecules. In cells, these antagonists inhibit the chromatin recruitment of wild type 53BP1, but do not affect 53BP1 variants unable to access the closed conformation despite preservation of the H4K20me2 binding site. Thus, this inhibition operates by shifting the conformational equilibrium toward the closed state. Our work therefore identifies an auto-associated form of 53BP1-autoinhibited for chromatin binding-that can be stabilized by small molecule ligands encapsulated between two 53BP1 protomers. Such ligands are valuable research tools to study the function of 53BP1 and have the potential to facilitate the development of new drugs for cancer therapy.

PubMed: 37773238
DOI: 10.1038/s41467-023-41821-6

実験手法

X-RAY DIFFRACTION (2.5 Å)