Crystal structure of the mCD1d/xxs (JJ304) /iNKTCR ternary complex

Summary for 6MJI

DescriptorT cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, CHIMERIC PROTEIN, Beta-chain,Tcell receptor chain,T cell receptor beta constant 2, Antigen-presenting glycoprotein CD1d1, ... (12 entities in total)
Functional Keywordsmhc-fold, ig-fold, glycolipid antigen presentation, t cell receptor, immune system
Biological sourceMus musculus (Mouse)
Total number of polymer chains4
Total molecular weight97517.1
Zajonc, D.M.,Bitra, A.,Janssens, J. (deposition date: 2018-09-20, release date: 2019-01-09, Last modification date: 2019-01-16)
Primary citation
Janssens, J.,Bitra, A.,Wang, J.,Decruy, T.,Venken, K.,van der Eycken, J.,Elewaut, D.,Zajonc, D.M.,van Calenbergh, S.
4"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.
ChemMedChem, 14:147-168, 2019
PubMed: 30556652 (PDB entries with the same primary citation)
DOI: 10.1002/cmdc.201800649
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2333 0.1% 2.8% 1.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 6mji
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Molmil generated image of 6mji
rotated about x axis by 90°
Molmil generated image of 6mji
rotated about y axis by 90°
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