6KYJ

Hybrid-Rubisco (rice RbcL and sorghum RbcS) in complex with sulfate ions

Summary for 6KYJ

• Entry DOI: 10.2210/pdb6kyj/pdb
• Descriptor: Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small chain, SULFATE ION, ... (5 entities in total)
• Functional Keywords: co2 assimilation, c4 plant, rice, rubisco, photosynthesis
• Biological source: Oryza sativa (Rice); More
• Total number of polymer chains: 8
• Total formula weight: 291458.01

Authors

Matsumura, H.,Yoshizawa, T.,Tanaka, S.,Yoshikawa, H. (deposition date: 2019-09-19, release date: 2020-09-16, Last modification date: 2023-11-22)

Primary citation

Matsumura, H.,Shiomi, K.,Yamamoto, A.,Taketani, Y.,Kobayashi, N.,Yoshizawa, T.,Tanaka, S.I.,Yoshikawa, H.,Endo, M.,Fukayama, H.
Hybrid Rubisco with Complete Replacement of Rice Rubisco Small Subunits by Sorghum Counterparts Confers C 4 Plant-like High Catalytic Activity.
Mol Plant, 13:1570-1581, 2020

PubMed Abstract: Photosynthetic rate at the present atmospheric condition is limited by the CO-fixing enzyme ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) because of its extremely low catalytic rate (k) and poor affinity for CO (K) and specificity for CO (S). Rubisco in C plants generally shows higher k than that in C plants. Rubisco consists of eight large subunits and eight small subunits (RbcS). Previously, the chimeric incorporation of sorghum C-type RbcS significantly increased the k of Rubisco in a C plant, rice. In this study, we knocked out rice RbcS multigene family using the CRISPR-Cas9 technology and completely replaced rice RbcS with sorghum RbcS in rice Rubisco. Obtained hybrid Rubisco showed almost C plant-like catalytic properties, i.e., higher k, higher K, and lower S. Transgenic lines expressing the hybrid Rubisco accumulated reduced levels of Rubisco, whereas they showed slightly but significantly higher photosynthetic capacity and similar biomass production under high CO condition compared with wild-type rice. High-resolution crystal structural analysis of the wild-type Rubisco and hybrid Rubisco revealed the structural differences around the central pore of Rubisco and the βC-βD hairpin in RbcS. We propose that such differences, particularly in the βC-βD hairpin, may impact the flexibility of Rubisco catalytic site and change its catalytic properties.

PubMed: 32882392
DOI: 10.1016/j.molp.2020.08.012

Experimental method

X-RAY DIFFRACTION (1.7 Å)