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6IV6

Cryo-EM structure of AcrVA5-acetylated MbCas12a in complex with crRNA

Summary for 6IV6
Entry DOI10.2210/pdb6iv6/pdb
EMDB information9742
Descriptornuclease, RNA (59-MER) (2 entities in total)
Functional Keywordsenzyme, immune system, immune system-rna complex, immune system/rna
Biological sourceMoraxella bovoculi
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Total number of polymer chains2
Total formula weight163927.29
Authors
Dong, L.,Li, N.,Guan, X.,Zhu, Y.,Gao, N.,Huang, Z. (deposition date: 2018-12-02, release date: 2019-04-10, Last modification date: 2025-07-02)
Primary citationDong, L.,Guan, X.,Li, N.,Zhang, F.,Zhu, Y.,Ren, K.,Yu, L.,Zhou, F.,Han, Z.,Gao, N.,Huang, Z.
An anti-CRISPR protein disables type V Cas12a by acetylation.
Nat. Struct. Mol. Biol., 26:308-314, 2019
Cited by
PubMed Abstract: Phages use anti-CRISPR proteins to deactivate the CRISPR-Cas system. The mechanisms for the inhibition of type I and type II systems by anti-CRISPRs have been elucidated. However, it has remained unknown how the type V CRISPR-Cas12a (Cpf1) system is inhibited by anti-CRISPRs. Here we identify the anti-CRISPR protein AcrVA5 and report the mechanisms by which it inhibits CRISPR-Cas12a. Our structural and biochemical data show that AcrVA5 functions as an acetyltransferase to modify Moraxella bovoculi (Mb) Cas12a at Lys635, a residue that is required for recognition of the protospacer-adjacent motif. The AcrVA5-mediated modification of MbCas12a results in complete loss of double-stranded DNA (dsDNA)-cleavage activity. In contrast, the Lys635Arg mutation renders MbCas12a completely insensitive to inhibition by AcrVA5. A cryo-EM structure of the AcrVA5-acetylated MbCas12a reveals that Lys635 acetylation provides sufficient steric hindrance to prevent dsDNA substrates from binding to the Cas protein. Our study reveals an unprecedented mechanism of CRISPR-Cas inhibition and suggests an evolutionary arms race between phages and bacteria.
PubMed: 30936526
DOI: 10.1038/s41594-019-0206-1
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (3.6 Å)
Structure validation

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