6GVP

TAILSPIKE PROTEIN MUTANT E372Q (DELTA N471/S472) OF E. COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE

Replaces:  4XQH

Summary for 6GVP

DescriptorTail spike protein, ALPHA-L-RHAMNOSE, ALPHA-D-GLUCOSE, ... (10 entities in total)
Functional Keywordsbeta helix, protein-carbohydrate complex, pectin lyase fold, viral protein
Biological sourceSalmonella phage HK620 (Bacteriophage HK620)
Total number of polymer chains1
Total molecular weight65979.42
Authors
Roske, Y.,Gohlke, U. (deposition date: 2018-06-21, release date: 2018-07-11)
Primary citation
Kunstmann, S.,Gohlke, U.,Broeker, N.K.,Roske, Y.,Heinemann, U.,Santer, M.,Barbirz, S.
Solvent networks tune thermodynamics of oligosaccharide complex formation in an extended protein binding site
To Be Published,
Experimental method
X-RAY DIFFRACTION (1.71 Å)
?

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.185200.8%1.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 6gvp
no rotation
Molmil generated image of 6gvp
rotated about x axis by 90°
Molmil generated image of 6gvp
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 6gvp
no rotation
Molmil generated image of 6gvp
rotated about x axis by 90°
Molmil generated image of 6gvp
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (6gvp.pdb1.gz [594.06 KB])
PDBj@FacebookPDBj@TwitterwwPDBwwPDB FoundationEM DataBank

Copyright © 2013-2018 Protein Data Bank Japan