tRNA 2'-phosphotransferase

Summary for 6EDE

DescriptorProbable RNA 2'-phosphotransferase, [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate (3 entities in total)
Functional Keywordskpta, tpt1, trpt1, transferase
Biological sourceClostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)
Total number of polymer chains1
Total molecular weight24075.26
Shuman, S.,Goldgur, Y.,Banerjee, A. (deposition date: 2018-08-09, release date: 2019-03-20)
Primary citation
Banerjee, A.,Munir, A.,Abdullahu, L.,Damha, M.J.,Goldgur, Y.,Shuman, S.
Structure of tRNA splicing enzyme Tpt1 illuminates the mechanism of RNA 2'-PO4recognition and ADP-ribosylation.
Nat Commun, 10:218-218, 2019
PubMed: 30644400 (PDB entries with the same primary citation)
DOI: 10.1038/s41467-018-08211-9
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.188300 1.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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