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6EDE

tRNA 2'-phosphotransferase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2018-08-02
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9791
Spacegroup nameP 61 2 2
Unit cell lengths53.284, 53.284, 308.393
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution46.145 - 1.553
R-factor0.1735
Rwork0.173
R-free0.18760
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6e3a
RMSD bond length0.005
RMSD bond angle0.853
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX ((1.12_2829))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.590
High resolution limit [Å]1.5501.550
Rpim0.0140.208
Number of reflections39099
<I/σ(I)>56.62.8
Completeness [%]99.385.8
Redundancy17.7
CC(1/2)0.9990.884
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2980.1M MES pH 6.0, 10 %MPD

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PDB entries from 2024-04-17

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